Human Gene ZNF131 (ENST00000682664.1_2) from GENCODE V47lift37
  Description: zinc finger protein 131, transcript variant 13 (from RefSeq NM_001330714.2)
Gencode Transcript: ENST00000682664.1_2
Gencode Gene: ENSG00000172262.12_11
Transcript (Including UTRs)
   Position: hg19 chr5:43,121,016-43,176,424 Size: 55,409 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr5:43,122,156-43,175,235 Size: 53,080 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:43,121,016-43,176,424)mRNA (may differ from genome)Protein (623 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZN131_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein 131;
FUNCTION: Plays a role during development and organogenesis as well as in the function of the adult central nervous system (By similarity). May be involved in transcriptional regulation as a repressor of ERalpha signaling.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Predominant expression is found in different brain areas such as the occipital and temporal lobe, the nucleus caudatus, hippocampus, and the cerebellum as well as in testis and thymus.
PTM: Sumoylation by CBX4 at Lys-601 by may potentiate the negative effect on estrogen signaling.
SIMILARITY: Belongs to the krueppel C2H2-type zinc-finger protein family.
SIMILARITY: Contains 1 BTB (POZ) domain.
SIMILARITY: Contains 6 C2H2-type zinc fingers.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ZNF131
Diseases sorted by gene-association score: split hand-foot malformation 1 (2), joubert syndrome 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -88.40225-0.393 Picture PostScript Text
3' UTR -274.701189-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000210 - BTB/POZ-like
IPR011333 - BTB/POZ_fold
IPR013069 - BTB_POZ
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00651 - BTB/POZ domain
PF12874 - Zinc-finger of C2H2 type

SCOP Domains:
54695 - POZ domain
57667 - beta-beta-alpha zinc fingers
57783 - Zinc beta-ribbon
57802 - Rubredoxin-like

ModBase Predicted Comparative 3D Structure on P52739
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0045944 positive regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0045111 intermediate filament cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  AK307963 - Homo sapiens cDNA, FLJ97911.
AK299315 - Homo sapiens cDNA FLJ55375 complete cds, highly similar to Zinc finger protein 131.
AK307977 - Homo sapiens cDNA, FLJ97925.
AK057343 - Homo sapiens cDNA FLJ32781 fis, clone TESTI2002149, highly similar to ZINC FINGER PROTEIN 131.
AK310735 - Homo sapiens cDNA, FLJ17777.
BC017923 - Homo sapiens zinc finger protein 131, mRNA (cDNA clone IMAGE:4699565), with apparent retained intron.
AB464373 - Synthetic construct DNA, clone: pF1KB7850, Homo sapiens ZNF131 gene for zinc finger protein 131, without stop codon, in Flexi system.
AL832081 - Homo sapiens mRNA; cDNA DKFZp313O1223 (from clone DKFZp313O1223).
AK307974 - Homo sapiens cDNA, FLJ97922.
BC035875 - Homo sapiens zinc finger protein 131, mRNA (cDNA clone MGC:46628 IMAGE:5519811), complete cds.
CU690222 - Synthetic construct Homo sapiens gateway clone IMAGE:100021206 5' read ZNF131 mRNA.
KJ901840 - Synthetic construct Homo sapiens clone ccsbBroadEn_11234 ZNF131 gene, encodes complete protein.
U09410 - Human zinc finger protein ZNF131 mRNA, partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DRL3, NM_001330714, P52739, Q6PIF0, uc330kgg.1, uc330kgg.2, ZN131_HUMAN
UCSC ID: ENST00000682664.1_2
RefSeq Accession: NM_001330707.2
Protein: P52739 (aka ZN131_HUMAN or Z131_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.