Human Gene ZNF224 (ENST00000693561.1_2) from GENCODE V47lift37
  Description: zinc finger protein 224 (from RefSeq NM_013398.5)
Gencode Transcript: ENST00000693561.1_2
Gencode Gene: ENSG00000267680.6_11
Transcript (Including UTRs)
   Position: hg19 chr19:44,598,514-44,613,979 Size: 15,466 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr19:44,602,027-44,612,437 Size: 10,411 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:44,598,514-44,613,979)mRNA (may differ from genome)Protein (707 aa)
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MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZN224_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein 224; AltName: Full=Bone marrow zinc finger 2; Short=BMZF-2; AltName: Full=Zinc finger protein 233; AltName: Full=Zinc finger protein 255; AltName: Full=Zinc finger protein 27; AltName: Full=Zinc finger protein KOX22;
FUNCTION: May be involved in transcriptional regulation as a transcriptional repressor. The DEPDC1A-ZNF224 complex may play a critical role in bladder carcinogenesis by repressing the transcription of the A20 gene, leading to transport of NF-KB protein into the nucleus, resulting in suppression of apoptosis of bladder cancer cells.
SUBUNIT: Interacts with WT1. Interacts with DEPDC1A.
SUBCELLULAR LOCATION: Nucleus. Note=Co-localizes with DEPDC1A at the nucleus.
TISSUE SPECIFICITY: Ubiquitous. Mainly expressed in fetal tissues.
SIMILARITY: Belongs to the krueppel C2H2-type zinc-finger protein family.
SIMILARITY: Contains 18 C2H2-type zinc fingers.
SIMILARITY: Contains 1 KRAB domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -107.40327-0.328 Picture PostScript Text
3' UTR -356.601542-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001909 - Krueppel-associated_box
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type
PF01352 - KRAB box
PF13912 - C2H2-type zinc finger

SCOP Domains:
109640 - KRAB domain (Kruppel-associated box)
82657 - BolA-like
57184 - Growth factor receptor domain
57667 - beta-beta-alpha zinc fingers
57783 - Zinc beta-ribbon

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2ELY - NMR MuPIT 2ELZ - NMR MuPIT 2EM0 - NMR MuPIT 2EM6 - NMR MuPIT 2EM7 - NMR MuPIT 2EM8 - NMR MuPIT 2EM9 - NMR MuPIT 2EN1 - NMR MuPIT 2EN8 - NMR MuPIT 2ENA - NMR MuPIT 2ENC - NMR MuPIT 2EOQ - NMR MuPIT 2EOR - NMR MuPIT 2EQ4 - NMR MuPIT 2YSP - NMR MuPIT 2YTH - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9NZL3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
 Gene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0045892 negative regulation of transcription, DNA-templated

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0017053 transcriptional repressor complex
GO:0031965 nuclear membrane


-  Descriptions from all associated GenBank mRNAs
  AF187990 - Homo sapiens zinc finger protein ZNF224 mRNA, complete cds.
AK025777 - Homo sapiens cDNA: FLJ22124 fis, clone HEP19352.
AK292500 - Homo sapiens cDNA FLJ78762 complete cds, highly similar to Homo sapiens zinc finger protein 224, mRNA.
JD140520 - Sequence 121544 from Patent EP1572962.
BC002889 - Homo sapiens zinc finger protein 224, mRNA (cDNA clone IMAGE:3941350), partial cds.
BC051902 - Homo sapiens zinc finger protein 224, mRNA (cDNA clone MGC:60362 IMAGE:6155240), complete cds.
JD272471 - Sequence 253495 from Patent EP1572962.
JD453025 - Sequence 434049 from Patent EP1572962.
JD453024 - Sequence 434048 from Patent EP1572962.
JD490837 - Sequence 471861 from Patent EP1572962.
JD357121 - Sequence 338145 from Patent EP1572962.
JD174316 - Sequence 155340 from Patent EP1572962.
JD081787 - Sequence 62811 from Patent EP1572962.
AB384700 - Synthetic construct DNA, clone: pF1KB1380, Homo sapiens ZNF224 gene for zinc finger protein 224, complete cds, without stop codon, in Flexi system.
EU446733 - Synthetic construct Homo sapiens clone IMAGE:100070356; IMAGE:100011942; FLH258772.01L zinc finger protein 224 (ZNF224) gene, encodes complete protein.
KJ897783 - Synthetic construct Homo sapiens clone ccsbBroadEn_07177 ZNF224 gene, encodes complete protein.
AF067164 - Homo sapiens zinc finger protein 2 mRNA, complete cds.
JD204634 - Sequence 185658 from Patent EP1572962.
AY148489 - Homo sapiens bone marrow zinc finger protein 2 (ZNF255) mRNA, complete cds.
X52353 - Human Kox22 mRNA for zinc finger protein, partial.
JD084019 - Sequence 65043 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NZL3 (Reactome details) participates in the following event(s):

R-HSA-975040 KRAB-ZNF / KAP Interaction
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A6NFW9, BMZF2, KOX22, NM_013398, P17033, Q86V10, Q8IZC8, Q9NZL3, Q9UID9, Q9Y2P6, uc330ysk.1, uc330ysk.2, ZN224_HUMAN, ZNF233, ZNF255, ZNF27
UCSC ID: ENST00000693561.1_2
RefSeq Accession: NM_001321645.3
Protein: Q9NZL3 (aka ZN224_HUMAN or Z224_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.