Human Gene ZNF34 (ENST00000429371.7_7) from GENCODE V47lift37

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Description: zinc finger protein 34, transcript variant 1 (from RefSeq NM_030580.5)
Gencode Transcript: ENST00000429371.7_7
Gencode Gene: ENSG00000196378.14_11
Transcript (Including UTRs)
Position: hg19 chr8:145,997,609-146,012,702 Size: 15,094 Total Exon Count: 6 Strand: -
Coding Region
Position: hg19 chr8:145,998,651-146,003,856 Size: 5,206 Coding Exon Count: 4

Page Index	Sequence and Links	Primers	CTD	Gene Alleles	RNA-Seq Expression
Microarray Expression	RNA Structure	Other Species	mRNA Descriptions	Other Names	Model Information
Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr8:145,997,609-146,012,702)			mRNA (may differ from genome)		Protein (539 aa)
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	AlphaFold
BioGPS	Ensembl	Entrez Gene	ExonPrimer	GeneCards	HGNC
MGI	OMIM	PubMed	UniProtKB	Wikipedia	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene C517041 (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II) C030973 cupric oxide

Common Gene Haplotype Alleles


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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 14.19 RPKM in Brain - Cerebellar Hemisphere Total median expression: 282.54 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-51.70	146	-0.354	Picture	PostScript	Text
3' UTR	-275.40	1042	-0.264	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog
Gene Details	Gene Details
Gene Sorter	Gene Sorter
	RGD

Descriptions from all associated GenBank mRNAs


	KJ903313 - Synthetic construct Homo sapiens clone ccsbBroadEn_12707 ZNF34 gene, encodes complete protein. AK096508 - Homo sapiens cDNA FLJ39189 fis, clone OCBBF2004612, highly similar to Zinc finger protein 34. JD446979 - Sequence 428003 from Patent EP1572962. JD170446 - Sequence 151470 from Patent EP1572962. JD472456 - Sequence 453480 from Patent EP1572962. JD421536 - Sequence 402560 from Patent EP1572962. JD179127 - Sequence 160151 from Patent EP1572962. AF086227 - Homo sapiens full length insert cDNA clone ZD16H04. BC028136 - Homo sapiens zinc finger protein 34, mRNA (cDNA clone MGC:39877 IMAGE:5215496), complete cds. BC004480 - Homo sapiens zinc finger protein 34, mRNA (cDNA clone MGC:10520 IMAGE:3938462), complete cds. AL833814 - Homo sapiens mRNA; cDNA DKFZp571K2312 (from clone DKFZp571K2312). JD167774 - Sequence 148798 from Patent EP1572962. JD553297 - Sequence 534321 from Patent EP1572962. JD265310 - Sequence 246334 from Patent EP1572962. KJ903312 - Synthetic construct Homo sapiens clone ccsbBroadEn_12706 ZNF34 gene, encodes complete protein. AB464431 - Synthetic construct DNA, clone: pF1KB8337, Homo sapiens ZNF34 gene, without stop codon, in Flexi system. AM392828 - Synthetic construct Homo sapiens clone IMAGE:100002169 for hypothetical protein (ZNF34 gene). JD314816 - Sequence 295840 from Patent EP1572962. JD314817 - Sequence 295841 from Patent EP1572962. JD314818 - Sequence 295842 from Patent EP1572962. JD151063 - Sequence 132087 from Patent EP1572962. JD080781 - Sequence 61805 from Patent EP1572962.

Other Names for This Gene


	Alternate Gene Symbols: A0A0C4DG42, A0A0C4DG42_HUMAN, ENST00000429371.1, ENST00000429371.2, ENST00000429371.3, ENST00000429371.4, ENST00000429371.5, ENST00000429371.6, NM_030580, uc319yhb.1, uc319yhb.2, ZNF34 UCSC ID: ENST00000429371.7_7 RefSeq Accession: NM_001286769.2

Gene Model Information


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Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.