Human Gene ZNF592 (ENST00000560079.7_4) from GENCODE V47lift37
  Description: zinc finger protein 592 (from RefSeq NM_014630.3)
Gencode Transcript: ENST00000560079.7_4
Gencode Gene: ENSG00000166716.10_8
Transcript (Including UTRs)
   Position: hg19 chr15:85,291,823-85,349,676 Size: 57,854 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr15:85,325,907-85,345,624 Size: 19,718 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:85,291,823-85,349,676)mRNA (may differ from genome)Protein (1267 aa)
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-  Comments and Description Text from UniProtKB
  ID: ZN592_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein 592;
FUNCTION: May be involved in transcriptional regulation.
SUBCELLULAR LOCATION: Nucleus (Probable).
TISSUE SPECIFICITY: Widely expressed, with highest levels in skeletal muscle. Expressed throughout the central nervous system, including in the cerebellum and cerebellar vermis, with higher expression in the substantia nigra. Widely expressed in fetal tissues.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
DISEASE: Defects in ZNF592 are the cause of spinocerebellar ataxia autosomal recessive type 5 (SCAR5) [MIM:606937]. Spinocerebellar ataxia defines a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCAR5 patients show developmental delay, psychomotor retardation, proportionate short stature, cerebellar spastic ataxia, microcephaly, optic atrophy, speech defect, abnormal osmiophilic pattern of skin vessels and cerebellar atrophy.
SIMILARITY: Belongs to the krueppel C2H2-type zinc-finger protein family.
SIMILARITY: Contains 13 C2H2-type zinc fingers.
SEQUENCE CAUTION: Sequence=BAA13202.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ZNF592
Diseases sorted by gene-association score: spinocerebellar ataxia autosomal recessive 5 (19), moved to 251300* (18), dyscalculia (11), cervical adenosquamous carcinoma (8), autosomal recessive cerebellar ataxia (4), bone resorption disease (4), bone remodeling disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.81 RPKM in Testis
Total median expression: 393.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -115.40331-0.349 Picture PostScript Text
3' UTR -1303.004052-0.322 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like

Pfam Domains:
PF00096 - Zinc finger, C2H2 type
PF16622 - zinc-finger C2H2-type

SCOP Domains:
48695 - Multiheme cytochromes
57667 - beta-beta-alpha zinc fingers

ModBase Predicted Comparative 3D Structure on Q92610
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  D86966 - Homo sapiens mRNA for KIAA0211 gene.
BC094688 - Homo sapiens zinc finger protein 592, mRNA (cDNA clone MGC:102942 IMAGE:30397050), complete cds.
BC143600 - Homo sapiens cDNA clone IMAGE:9052112.
BC112234 - Homo sapiens zinc finger protein 592, mRNA (cDNA clone MGC:138439 IMAGE:8327702), complete cds.
BC112232 - Homo sapiens zinc finger protein 592, mRNA (cDNA clone MGC:138437 IMAGE:8327700), complete cds.
AB383801 - Synthetic construct DNA, clone: pF1KSDA0211, Homo sapiens ZNF592 gene for zinc finger protein 592, complete cds, without stop codon, in Flexi system.
DQ575217 - Homo sapiens piRNA piR-43329, complete sequence.
JD458255 - Sequence 439279 from Patent EP1572962.
JD200050 - Sequence 181074 from Patent EP1572962.
JD536047 - Sequence 517071 from Patent EP1572962.
JD187591 - Sequence 168615 from Patent EP1572962.
JD331387 - Sequence 312411 from Patent EP1572962.
DQ583353 - Homo sapiens piRNA piR-50465, complete sequence.
DQ570971 - Homo sapiens piRNA piR-31083, complete sequence.
BC040038 - Homo sapiens zinc finger protein 592, mRNA (cDNA clone IMAGE:6013386), with apparent retained intron.
JD544530 - Sequence 525554 from Patent EP1572962.
JD439779 - Sequence 420803 from Patent EP1572962.
JD407906 - Sequence 388930 from Patent EP1572962.
JD291004 - Sequence 272028 from Patent EP1572962.
JD555746 - Sequence 536770 from Patent EP1572962.
JD134663 - Sequence 115687 from Patent EP1572962.
JD220358 - Sequence 201382 from Patent EP1572962.
JD098728 - Sequence 79752 from Patent EP1572962.
JD226696 - Sequence 207720 from Patent EP1572962.
JD205020 - Sequence 186044 from Patent EP1572962.
JD565566 - Sequence 546590 from Patent EP1572962.
JD079872 - Sequence 60896 from Patent EP1572962.
JD423748 - Sequence 404772 from Patent EP1572962.
AK090507 - Homo sapiens cDNA FLJ33188 fis, clone ADRGL2004749.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000560079.1, ENST00000560079.2, ENST00000560079.3, ENST00000560079.4, ENST00000560079.5, ENST00000560079.6, KIAA0211, NM_014630, Q2M1T2, Q504Y9, Q92610, uc325nrf.1, uc325nrf.2, ZN592_HUMAN
UCSC ID: ENST00000560079.7_4
RefSeq Accession: NM_014630.3
Protein: Q92610 (aka ZN592_HUMAN or Z592_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.