Human Gene ZNF622 (ENST00000308683.3_7) from GENCODE V47lift37
  Description: zinc finger protein 622 (from RefSeq NM_033414.3)
Gencode Transcript: ENST00000308683.3_7
Gencode Gene: ENSG00000173545.5_9
Transcript (Including UTRs)
   Position: hg19 chr5:16,451,628-16,465,909 Size: 14,282 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr5:16,451,766-16,465,774 Size: 14,009 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:16,451,628-16,465,909)mRNA (may differ from genome)Protein (477 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZN622_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein 622; AltName: Full=Zinc finger-like protein 9;
FUNCTION: May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.
SUBUNIT: Homo- and heterodimer. Interacts with MELK and MYBL2.
INTERACTION: Q99683:MAP3K5; NbExp=14; IntAct=EBI-2687480, EBI-476263;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Expressed in lung, kidney, spleen, liver and brain with lowest expression in kidney.
PTM: Phosphorylated by MELK. The phosphorylation may redirect the protein to the nucleus.
SIMILARITY: Contains 2 U1-type zinc fingers.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 25.73 RPKM in Heart - Left Ventricle
Total median expression: 734.90 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.40135-0.359 Picture PostScript Text
3' UTR -30.30138-0.220 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR022755 - Znf_C2H2_jaz
IPR003604 - Znf_U1

Pfam Domains:
PF12171 - Zinc-finger double-stranded RNA-binding
PF12756 - C2H2 type zinc-finger (2 copies)
PF12874 - Zinc-finger of C2H2 type

SCOP Domains:
48371 - ARM repeat
57667 - beta-beta-alpha zinc fingers

ModBase Predicted Comparative 3D Structure on Q969S3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene Details  Gene DetailsGene DetailsGene Details
Gene Sorter  Gene SorterGene SorterGene Sorter
  Ensembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding

Biological Process:
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0008631 intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0033674 positive regulation of kinase activity
GO:0042273 ribosomal large subunit biogenesis
GO:0043065 positive regulation of apoptotic process
GO:0043410 positive regulation of MAPK cascade
GO:0046330 positive regulation of JNK cascade

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0022625 cytosolic large ribosomal subunit
GO:0030687 preribosome, large subunit precursor


-  Descriptions from all associated GenBank mRNAs
  LF210235 - JP 2014500723-A/17738: Polycomb-Associated Non-Coding RNAs.
BC010545 - Homo sapiens zinc finger protein 622, mRNA (cDNA clone MGC:17552 IMAGE:3463070), complete cds.
BC008752 - Homo sapiens zinc finger protein 622, mRNA (cDNA clone MGC:2485 IMAGE:3345757), complete cds.
AY046059 - Homo sapiens zinc finger-like protein 9 (ZPR9) mRNA, complete cds.
KJ899904 - Synthetic construct Homo sapiens clone ccsbBroadEn_09298 ZNF622-like gene, encodes complete protein.
AB384357 - Synthetic construct DNA, clone: pF1KSDB0012, Homo sapiens ZNF622 gene for zinc finger protein 622, complete cds, without stop codon, in Flexi system.
LF336049 - JP 2014500723-A/143552: Polycomb-Associated Non-Coding RNAs.
LF336047 - JP 2014500723-A/143550: Polycomb-Associated Non-Coding RNAs.
LF336044 - JP 2014500723-A/143547: Polycomb-Associated Non-Coding RNAs.
LF336043 - JP 2014500723-A/143546: Polycomb-Associated Non-Coding RNAs.
MA445812 - JP 2018138019-A/17738: Polycomb-Associated Non-Coding RNAs.
MA571626 - JP 2018138019-A/143552: Polycomb-Associated Non-Coding RNAs.
MA571624 - JP 2018138019-A/143550: Polycomb-Associated Non-Coding RNAs.
MA571621 - JP 2018138019-A/143547: Polycomb-Associated Non-Coding RNAs.
MA571620 - JP 2018138019-A/143546: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000308683.1, ENST00000308683.2, NM_033414, Q969S3, uc317oja.1, uc317oja.2, ZN622_HUMAN, ZNF622 , ZPR9
UCSC ID: ENST00000308683.3_7
RefSeq Accession: NM_033414.3
Protein: Q969S3 (aka ZN622_HUMAN or Z622_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.