Human Gene ZNF717 (ENST00000652011.2_7) from GENCODE V47lift37
  Description: zinc finger protein 717, transcript variant 2 (from RefSeq NM_001290208.3)
Gencode Transcript: ENST00000652011.2_7
Gencode Gene: ENSG00000227124.11_12
Transcript (Including UTRs)
   Position: hg19 chr3:75,785,019-75,834,700 Size: 49,682 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr3:75,786,029-75,832,513 Size: 46,485 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:75,785,019-75,834,700)mRNA (may differ from genome)Protein (914 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZN717_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein 717; AltName: Full=Krueppel-like factor X17;
FUNCTION: May be involved in transcriptional regulation (By similarity).
SUBCELLULAR LOCATION: Nucleus (Potential).
SIMILARITY: Belongs to the krueppel C2H2-type zinc-finger protein family.
SIMILARITY: Contains 22 C2H2-type zinc fingers.
SIMILARITY: Contains 1 KRAB domain.
SEQUENCE CAUTION: Sequence=AAK28319.1; Type=Frameshift; Positions=685;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -75.00168-0.446 Picture PostScript Text
3' UTR -266.001010-0.263 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001909 - Krueppel-associated_box
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type
PF01352 - KRAB box
PF13912 - C2H2-type zinc finger

SCOP Domains:
109640 - KRAB domain (Kruppel-associated box)
57667 - beta-beta-alpha zinc fingers
57783 - Zinc beta-ribbon
57889 - Cysteine-rich domain

ModBase Predicted Comparative 3D Structure on Q9BY31
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  AK123776 - Homo sapiens cDNA FLJ41782 fis, clone IMR322018192, weakly similar to ZINC FINGER PROTEIN 90.
JD032199 - Sequence 13223 from Patent EP1572962.
JD382093 - Sequence 363117 from Patent EP1572962.
AF226994 - Homo sapiens kruppel-like zinc finger factor X17 mRNA, partial cds.
JD370004 - Sequence 351028 from Patent EP1572962.
LF375855 - JP 2014500723-A/183358: Polycomb-Associated Non-Coding RNAs.
LF375856 - JP 2014500723-A/183359: Polycomb-Associated Non-Coding RNAs.
LF360009 - JP 2014500723-A/167512: Polycomb-Associated Non-Coding RNAs.
LF360010 - JP 2014500723-A/167513: Polycomb-Associated Non-Coding RNAs.
LF375857 - JP 2014500723-A/183360: Polycomb-Associated Non-Coding RNAs.
LF360011 - JP 2014500723-A/167514: Polycomb-Associated Non-Coding RNAs.
MA611432 - JP 2018138019-A/183358: Polycomb-Associated Non-Coding RNAs.
MA611433 - JP 2018138019-A/183359: Polycomb-Associated Non-Coding RNAs.
MA595586 - JP 2018138019-A/167512: Polycomb-Associated Non-Coding RNAs.
MA595587 - JP 2018138019-A/167513: Polycomb-Associated Non-Coding RNAs.
MA611434 - JP 2018138019-A/183360: Polycomb-Associated Non-Coding RNAs.
MA595588 - JP 2018138019-A/167514: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BY31 (Reactome details) participates in the following event(s):

R-HSA-975040 KRAB-ZNF / KAP Interaction
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A0A494C0W3, ENST00000652011.1, NM_001290208, Q9BY31, uc328tsu.1, uc328tsu.2, ZN717_HUMAN, ZNF717
UCSC ID: ENST00000652011.2_7
RefSeq Accession: NM_001290208.3
Protein: Q9BY31 (aka ZN717_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.