Human Gene ZNF821 (ENST00000313565.10_9) from GENCODE V47lift37
  Description: zinc finger protein 821, transcript variant 6 (from RefSeq NM_001318238.2)
Gencode Transcript: ENST00000313565.10_9
Gencode Gene: ENSG00000102984.15_23
Transcript (Including UTRs)
   Position: hg19 chr16:71,893,583-71,918,093 Size: 24,511 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr16:71,893,921-71,913,849 Size: 19,929 Coding Exon Count: 5 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:71,893,583-71,918,093)mRNA (may differ from genome)Protein (370 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIPubMedUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.20 RPKM in Testis
Total median expression: 281.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -187.20423-0.443 Picture PostScript Text
3' UTR -117.70338-0.348 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  LF208308 - JP 2014500723-A/15811: Polycomb-Associated Non-Coding RNAs.
BC004563 - Homo sapiens hypothetical protein LOC55565, mRNA (cDNA clone IMAGE:4053325), partial cds.
BC091492 - Homo sapiens zinc finger protein 821, mRNA (cDNA clone IMAGE:30387263), with apparent retained intron.
AF070588 - Homo sapiens clone 24554 unknown mRNA.
BC012116 - Homo sapiens zinc finger protein 821, mRNA (cDNA clone MGC:20131 IMAGE:4553333), complete cds.
JD062059 - Sequence 43083 from Patent EP1572962.
JD068637 - Sequence 49661 from Patent EP1572962.
JD362135 - Sequence 343159 from Patent EP1572962.
JD212250 - Sequence 193274 from Patent EP1572962.
AK296603 - Homo sapiens cDNA FLJ57016 complete cds.
JD317993 - Sequence 299017 from Patent EP1572962.
JD365370 - Sequence 346394 from Patent EP1572962.
JD475895 - Sequence 456919 from Patent EP1572962.
JD130373 - Sequence 111397 from Patent EP1572962.
JD419242 - Sequence 400266 from Patent EP1572962.
AK313693 - Homo sapiens cDNA, FLJ94283.
HQ447826 - Synthetic construct Homo sapiens clone IMAGE:100071169; CCSB007117_01 hypothetical protein LOC55565 (ZNF821) gene, encodes complete protein.
KJ899150 - Synthetic construct Homo sapiens clone ccsbBroadEn_08544 ZNF821-like gene, encodes complete protein.
AB527767 - Synthetic construct DNA, clone: pF1KB5819, Homo sapiens ZNF821 gene for zinc finger protein 821, without stop codon, in Flexi system.
CU680220 - Synthetic construct Homo sapiens gateway clone IMAGE:100019114 5' read LOC55565 mRNA.
LF374513 - JP 2014500723-A/182016: Polycomb-Associated Non-Coding RNAs.
DQ586295 - Homo sapiens piRNA piR-53407, complete sequence.
AK131336 - Homo sapiens cDNA FLJ16350 fis, clone TESTI2037830.
LF374512 - JP 2014500723-A/182015: Polycomb-Associated Non-Coding RNAs.
JD434701 - Sequence 415725 from Patent EP1572962.
MA443885 - JP 2018138019-A/15811: Polycomb-Associated Non-Coding RNAs.
MA610090 - JP 2018138019-A/182016: Polycomb-Associated Non-Coding RNAs.
MA610089 - JP 2018138019-A/182015: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0C4DH12, A0A0C4DH12_HUMAN, ENST00000313565.1, ENST00000313565.2, ENST00000313565.3, ENST00000313565.4, ENST00000313565.5, ENST00000313565.6, ENST00000313565.7, ENST00000313565.8, ENST00000313565.9, NM_001318238, uc317pld.1, uc317pld.2, ZNF821
UCSC ID: ENST00000313565.10_9
RefSeq Accession: NM_001201554.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.