Human Gene ZSWIM8 (ENST00000604729.6_7) from GENCODE V47lift37

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Description: zinc finger SWIM-type containing 8, transcript variant 5 (from RefSeq NR_160292.1)
Gencode Transcript: ENST00000604729.6_7
Gencode Gene: ENSG00000214655.11_17
Transcript (Including UTRs)
Position: hg19 chr10:75,545,364-75,561,551 Size: 16,188 Total Exon Count: 26 Strand: +
Coding Region
Position: hg19 chr10:75,545,637-75,561,277 Size: 15,641 Coding Exon Count: 26

Page Index	Sequence and Links	Primers	CTD	Gene Alleles	RNA-Seq Expression
Microarray Expression	RNA Structure	Other Species	mRNA Descriptions	Other Names	Model Information
Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr10:75,545,364-75,561,551)			mRNA (may differ from genome)		Protein (1834 aa)
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Gene interactions	Table Schema
AlphaFold	BioGPS	Ensembl	Entrez Gene	ExonPrimer	GeneCards
HGNC	MGI	PubMed	UniProtKB	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl D003375 Coumestrol D003993 Dibutyl Phthalate C059514 resveratrol C025643 vinclozolin

Common Gene Haplotype Alleles


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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 41.05 RPKM in Pituitary Total median expression: 897.43 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-132.60	273	-0.486	Picture	PostScript	Text
3' UTR	-101.00	274	-0.369	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog
Gene Details	Gene Details
Gene Sorter	Gene Sorter
	RGD	Ensembl

Descriptions from all associated GenBank mRNAs


	AK091621 - Homo sapiens cDNA FLJ34302 fis, clone FEBRA2007620. AX747098 - Sequence 623 from Patent EP1308459. AB020720 - Homo sapiens KIAA0913 mRNA for KIAA0913 protein, partial cds. BC137249 - Homo sapiens KIAA0913, mRNA (cDNA clone IMAGE:9021246), complete cds. BC137250 - Homo sapiens KIAA0913, mRNA (cDNA clone IMAGE:9021247), complete cds. BC151206 - Homo sapiens KIAA0913, mRNA (cDNA clone MGC:164743 IMAGE:40147119), complete cds. AB384542 - Synthetic construct DNA, clone: pF1KA0913, Homo sapiens KIAA0913 gene for KIAA0913 protein, complete cds, without stop codon, in Flexi system. BC156550 - Synthetic construct Homo sapiens clone IMAGE:100063206, MGC:190716 KIAA0913 (KIAA0913) mRNA, encodes complete protein. JD262786 - Sequence 243810 from Patent EP1572962. JD167044 - Sequence 148068 from Patent EP1572962. JD525550 - Sequence 506574 from Patent EP1572962. JD066388 - Sequence 47412 from Patent EP1572962. AL133662 - Homo sapiens mRNA; cDNA DKFZp434E0121 (from clone DKFZp434E0121). BC111006 - Homo sapiens KIAA0913, mRNA (cDNA clone IMAGE:5743924), partial cds. AK023742 - Homo sapiens cDNA FLJ13680 fis, clone PLACE2000007, highly similar to Homo sapiens mRNA for KIAA0913 protein. BC117205 - Homo sapiens KIAA0913, mRNA (cDNA clone IMAGE:40125756), partial cds. JD062669 - Sequence 43693 from Patent EP1572962. JD205440 - Sequence 186464 from Patent EP1572962. BC040726 - Homo sapiens KIAA0913, mRNA (cDNA clone IMAGE:6155781), partial cds. AK309136 - Homo sapiens cDNA, FLJ99177. BC036835 - Homo sapiens KIAA0913, mRNA (cDNA clone IMAGE:4914657), partial cds. BC063694 - Homo sapiens KIAA0913, mRNA (cDNA clone IMAGE:4748944), partial cds.

Other Names for This Gene


	Alternate Gene Symbols: ENST00000604729.1, ENST00000604729.2, ENST00000604729.3, ENST00000604729.4, ENST00000604729.5, NR_160292, S4R410, S4R410_HUMAN, uc327imw.1, uc327imw.2, ZSWIM8 UCSC ID: ENST00000604729.6_7 RefSeq Accession: NM_001367799.1

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


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