Human Gene ZW10 (ENST00000200135.8_7) from GENCODE V47lift37
  Description: zw10 kinetochore protein (from RefSeq NM_004724.4)
Gencode Transcript: ENST00000200135.8_7
Gencode Gene: ENSG00000086827.9_10
Transcript (Including UTRs)
   Position: hg19 chr11:113,603,909-113,644,414 Size: 40,506 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr11:113,604,416-113,644,388 Size: 39,973 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:113,603,909-113,644,414)mRNA (may differ from genome)Protein (779 aa)
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-  Comments and Description Text from UniProtKB
  ID: ZW10_HUMAN
DESCRIPTION: RecName: Full=Centromere/kinetochore protein zw10 homolog;
FUNCTION: Essential component of the mitotic checkpoint, which prevents cells from prematurely exiting mitosis. Required for the assembly of the dynein-dynactin and MAD1-MAD2 complexes onto kinetochores. Involved in regulation of membrane traffic between the Golgi and the endoplasmic reticulum.
SUBUNIT: Associated with a SNARE complex consisting of STX18, USE1L, BNIP1/SEC20L, and SEC22B through direct interaction with RINT1/TIP20L bound to BNIP1/SEC20L. Component of the RZZ complex composed of KNTC1/ROD, ZW10 and ZWILCH. Interacts with C19orf25, KNTC1, and ZWINT.
INTERACTION: O95229:ZWINT; NbExp=6; IntAct=EBI-1001217, EBI-1001132;
SUBCELLULAR LOCATION: Cytoplasm. Endoplasmic reticulum membrane; Peripheral membrane protein. Chromosome, centromere, kinetochore. Cytoplasm, cytoskeleton, spindle. Note=Dynamic pattern of localization during the cell cycle. In most cells at interphase, present diffusely in the cytoplasm. In prometaphase, associated with the kinetochore. At metaphase, detected both at the kinetochores and, most prominently, at the spindle, particularly at the spindle poles. In very early anaphase, detected on segregating kinetochores. In late anaphase and telophase, accumulates at the spindle midzone.
TISSUE SPECIFICITY: Widely expressed.
DEVELOPMENTAL STAGE: No significant variation in expression during cell cycle.
MISCELLANEOUS: Overexpression as well as silencing of ZW10 disrupts the morphology of the ER-Golgi intermediate compartment as well as the Golgi apparatus and slows down ER-Golgi transport.
SIMILARITY: Belongs to the ZW10 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.16 RPKM in Testis
Total median expression: 263.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.8026-0.146 Picture PostScript Text
3' UTR -145.90507-0.288 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009361 - RZZ-complex_Zw10

Pfam Domains:
PF06248 - Centromere/kinetochore Zw10

ModBase Predicted Comparative 3D Structure on O43264
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019237 centromeric DNA binding

Biological Process:
GO:0000070 mitotic sister chromatid segregation
GO:0000132 establishment of mitotic spindle orientation
GO:0000278 mitotic cell cycle
GO:0006888 ER to Golgi vesicle-mediated transport
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
GO:0007030 Golgi organization
GO:0007049 cell cycle
GO:0007080 mitotic metaphase plate congression
GO:0007093 mitotic cell cycle checkpoint
GO:0007094 mitotic spindle assembly checkpoint
GO:0007096 regulation of exit from mitosis
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
GO:0034501 protein localization to kinetochore
GO:0051301 cell division
GO:0051321 meiotic cell cycle
GO:0065003 macromolecular complex assembly

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0000922 spindle pole
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005819 spindle
GO:0005828 kinetochore microtubule
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0016020 membrane
GO:0070939 Dsl1/NZR complex
GO:1990423 RZZ complex


-  Descriptions from all associated GenBank mRNAs
  AK303871 - Homo sapiens cDNA FLJ56935 complete cds, highly similar to Centromere/kinetochore protein zw10 homolog.
U54996 - Human protein ZW10 homolog (HZW10) mRNA, complete cds.
BC128264 - Homo sapiens ZW10, kinetochore associated, homolog (Drosophila), mRNA (cDNA clone MGC:149821 IMAGE:40118818), complete cds.
AK300746 - Homo sapiens cDNA FLJ56672 complete cds, highly similar to Centromere/kinetochore protein zw10 homolog.
AK312925 - Homo sapiens cDNA, FLJ93375, highly similar to Homo sapiens ZW10, kinetochore associated, homolog (Drosophila) (ZW10), mRNA.
JD338884 - Sequence 319908 from Patent EP1572962.
JD220753 - Sequence 201777 from Patent EP1572962.
JD563585 - Sequence 544609 from Patent EP1572962.
JD044065 - Sequence 25089 from Patent EP1572962.
JD194792 - Sequence 175816 from Patent EP1572962.
DL492400 - Novel nucleic acids.
DL490883 - Novel nucleic acids.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O43264 (Reactome details) participates in the following event(s):

R-HSA-6811423 Retrograde vesicle is tethered at the ER by the NRZ complex and t-SNAREs
R-HSA-141409 Mad1 binds kinetochore
R-HSA-375302 Kinetochore capture of astral microtubules
R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666169 Kinetochore capture of astral microtubules is positively regulated by CDC42:GTP:p-S196-DIAPH2-2
R-HSA-141431 MAD2 associates with the Mad1 kinetochore complex
R-HSA-141439 Release of activated MAD2 from kinetochores
R-HSA-2467811 Separation of sister chromatids
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-141422 MAD2 converted to an inhibitory state via interaction with Mad1
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
R-HSA-68877 Mitotic Prometaphase
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-141424 Amplification of signal from the kinetochores
R-HSA-68886 M Phase
R-HSA-195258 RHO GTPase Effectors
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-68882 Mitotic Anaphase
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-194315 Signaling by Rho GTPases
R-HSA-199991 Membrane Trafficking
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-1640170 Cell Cycle
R-HSA-162582 Signal Transduction
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: A1A528, ENST00000200135.1, ENST00000200135.2, ENST00000200135.3, ENST00000200135.4, ENST00000200135.5, ENST00000200135.6, ENST00000200135.7, NM_004724, O43264, uc317chs.1, uc317chs.2, ZW10_HUMAN
UCSC ID: ENST00000200135.8_7
RefSeq Accession: NM_004724.4
Protein: O43264 (aka ZW10_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.