UCSC Genome Browser Gene Interaction Graph

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Gene interactions and pathways from curated databases and text-mining

XRN1: top 25 interacting genes (chr3:142025451-142166879)

Mouse over or click genes or lines for details. Dashed lines indicate interactions without text mining support. Click any gene to make it the new center. Click any line to show details about the interaction. Only XRN1-interacting genes and only the most-mentioned/most-curated interactions are shown in the graph. See the Help Page for details.

Less-frequently mentioned interactions with XRN1, not among the Top 25

Other genes interacting with XRN1. Mouse-over to show number of abstracts or databases. Sorted by article count (sort alphabetically).
Like above, interactions are colored by support. Grey:only text mining, light-blue:interaction database, blue:pathway database

DHH ▸ RBP1 ▸ BRF1 ▸ EXOSC10 ▸ RNASE3 ▸ PARN ▸ RNASEL ▸
ZC3HAV1 ▸ EXOSC2 ▸ EXOSC4 ▸ EIF3E ▸ KHSRP ▸ XRN2 ▸ SMG1 ▸
PLK1 ▸ HDAC2 ▸ HNRNPA1 ▸ MOGS ▸ NOP58 ▸ PLOD3 ▸ SPATA20 ▸
DCP1B ▸ SLC25A13 ▸ GCDH ▸ ETFA ▸ NDUFA13 ▸ ATP1A1 ▸ PSMB1 ▸
PSME4 ▸ SLC25A11 ▸ SLIT2 ▸ DNAJA3 ▸ MAX ▸ SMARCA5 ▸ EEF1G ▸
HELLS ▸ IGF2BP2 ▸ SSR4 ▸ PSMA4 ▸ CHD4 ▸ EIF4ENIF1 ▸ OAT ▸
MSH6 ▸ RUVBL2 ▸ SMG6 ▸ CHTF18 ▸ GSPT1 ▸ IPO7 ▸ MAPRE1 ▸
DQX1 ▸ PSMC2 ▸ C1QBP ▸ EIF3I ▸ NDUFA5 ▸ NUP133 ▸ MAPKAP1 ▸
RFC2 ▸ IDH3A ▸ DPP7 ▸ FANCD2 ▸ SLC25A1 ▸ GANAB ▸ ARF4 ▸
HIST1H2BL ▸ NUP153 ▸ PCBP1 ▸ PSMA1 ▸ COPG1 ▸ EIF2A ▸ PPT1 ▸
NOP56 ▸ PRKDC ▸ DPM1 ▸ ASS1 ▸ SNRPD1 ▸ DNAJB6 ▸ EDC4 ▸
TCP1 ▸ UBR2 ▸ HDAC1 ▸ POLR2B ▸ PATL2 ▸ SMC2 ▸ KPNB1 ▸
TOP2A ▸ U2SURP ▸ YWHAE ▸ PTPN14 ▸ LMNA ▸ SKIV2L2 ▸ SMG5 ▸
TRIM28 ▸ CCT4 ▸ MLH1 ▸ MARS ▸ HNRNPK ▸ KPNA4 ▸ MYO9A ▸
NAA38 ▸ SKP1 ▸ BAG6 ▸ CCT2 ▸ MYO5C ▸ XRCC5 ▸ WDR77 ▸
IQGAP2 ▸ FBXW7 ▸ PSMC1 ▸ EIF4E ▸ PSMB5 ▸ MRPS34 ▸ FBXW8 ▸
CCT5 ▸ IPO4 ▸ PSMA3 ▸ PSMC3 ▸ HSPD1 ▸ DCP1A ▸ IGF2BP1 ▸
RNGTT ▸ PRPF6 ▸ WAPAL ▸ MCM7 ▸ CYR61 ▸ DDX1 ▸ PSMA2 ▸
TUBA4A ▸ ATP5C1 ▸ EXOSC1 ▸ TRRAP ▸ BCR ▸ NEK9 ▸ RPP30 ▸
CCT8 ▸ GTF3C2 ▸ RNH1 ▸ TOP1 ▸ DXO ▸ CEPT1 ▸ MSH3 ▸
EXOSC6 ▸ SUCLG1 ▸ DDX6 ▸ DNAJA2 ▸ EXOSC8 ▸ DYNC1H1 ▸ CCAR2 ▸
MYO9B ▸ SEC61A1 ▸ SHOC2 ▸ GSG2 ▸ CSE1L ▸ NDUFS1 ▸ ZNF121 ▸
HNRNPA0 ▸ HUWE1 ▸ TMPO ▸ DDX20 ▸ NDUFA8 ▸ DDX3X ▸ HSPH1 ▸
NCBP2 ▸ LDHA ▸ CCT3 ▸ IQGAP3 ▸ MYBBP1A ▸ SMARCC1 ▸ XPO1 ▸
SKIV2L ▸ PTGES2 ▸ XRCC6 ▸ MMS19 ▸ HADHB ▸ SQSTM1 ▸ ALDOA ▸
TTC27 ▸ PPP1CA ▸ TUBGCP2 ▸ ATP5J2 ▸ POLE ▸ CDK1 ▸ CCT6A ▸
LSM10 ▸ SQRDL ▸ UBC ▸ DHX15 ▸ GTF3C3 ▸ DHX32 ▸ NCL ▸
PABPC4 ▸ RFC5 ▸ AP1G2 ▸ MKI67IP ▸ EP400 ▸ RAF1 ▸ EFTUD2 ▸
PSMD4 ▸ NONO ▸ IPO9 ▸ ARL1 ▸ MYC ▸ XPOT ▸ MRPS22 ▸
CENPBD1 ▸ COPG2 ▸ EIF4E1B ▸ PSMB4 ▸ GTF3C1 ▸ RPN2 ▸ NCBP2L ▸
PATL1 ▸ TAZ ▸ KIAA0020 ▸ ATP2A2 ▸ SIRT7 ▸ POLD1 ▸ KPNA2 ▸
PSMC6 ▸ FBL ▸ IRAK1 ▸ PPP6C ▸ XPO5 ▸ DIMT1 ▸ NDUFS2 ▸
SNRNP200 ▸ EIF4A1 ▸ PSMC4 ▸ ALDH1B1 ▸ YWHAQ ▸ DDX52 ▸ IDH3B ▸
ERCC3 ▸ IKBKAP ▸ ILVBL ▸ IRS4 ▸ SMARCD2 ▸ PSMD2 ▸ ARHGEF2 ▸
UBE3C ▸ RPN1 ▸ SLC25A12 ▸ POLR2A ▸ PSMD3 ▸ STAM2 ▸ MSH2 ▸
SMC4 ▸ PSMB3 ▸ ZNF281 ▸ HIGD1A ▸ TUBG1 ▸ SARS ▸ IPO13 ▸
HEATR1 ▸ HSPB1 ▸ PSMA7 ▸ RFC3 ▸ RUVBL1 ▸ P4HA1 ▸ VWA5B2 ▸
NMD3 ▸ RANBP2 ▸ NDUFS3 ▸ IDH3G ▸ TRMT1L ▸ GTF3C4 ▸ GTF2I ▸
SPTLC1 ▸ YWHAB ▸ PSMA5 ▸ GCN1L1 ▸ LONP1 ▸

Data information

Please see the Gene Interactions Track Manual.

DHH ▸	RBP1 ▸	BRF1 ▸	EXOSC10 ▸	RNASE3 ▸	PARN ▸	RNASEL ▸
ZC3HAV1 ▸	EXOSC2 ▸	EXOSC4 ▸	EIF3E ▸	KHSRP ▸	XRN2 ▸	SMG1 ▸
PLK1 ▸	HDAC2 ▸	HNRNPA1 ▸	MOGS ▸	NOP58 ▸	PLOD3 ▸	SPATA20 ▸
DCP1B ▸	SLC25A13 ▸	GCDH ▸	ETFA ▸	NDUFA13 ▸	ATP1A1 ▸	PSMB1 ▸
PSME4 ▸	SLC25A11 ▸	SLIT2 ▸	DNAJA3 ▸	MAX ▸	SMARCA5 ▸	EEF1G ▸
HELLS ▸	IGF2BP2 ▸	SSR4 ▸	PSMA4 ▸	CHD4 ▸	EIF4ENIF1 ▸	OAT ▸
MSH6 ▸	RUVBL2 ▸	SMG6 ▸	CHTF18 ▸	GSPT1 ▸	IPO7 ▸	MAPRE1 ▸
DQX1 ▸	PSMC2 ▸	C1QBP ▸	EIF3I ▸	NDUFA5 ▸	NUP133 ▸	MAPKAP1 ▸
RFC2 ▸	IDH3A ▸	DPP7 ▸	FANCD2 ▸	SLC25A1 ▸	GANAB ▸	ARF4 ▸
HIST1H2BL ▸	NUP153 ▸	PCBP1 ▸	PSMA1 ▸	COPG1 ▸	EIF2A ▸	PPT1 ▸
NOP56 ▸	PRKDC ▸	DPM1 ▸	ASS1 ▸	SNRPD1 ▸	DNAJB6 ▸	EDC4 ▸
TCP1 ▸	UBR2 ▸	HDAC1 ▸	POLR2B ▸	PATL2 ▸	SMC2 ▸	KPNB1 ▸
TOP2A ▸	U2SURP ▸	YWHAE ▸	PTPN14 ▸	LMNA ▸	SKIV2L2 ▸	SMG5 ▸
TRIM28 ▸	CCT4 ▸	MLH1 ▸	MARS ▸	HNRNPK ▸	KPNA4 ▸	MYO9A ▸
NAA38 ▸	SKP1 ▸	BAG6 ▸	CCT2 ▸	MYO5C ▸	XRCC5 ▸	WDR77 ▸
IQGAP2 ▸	FBXW7 ▸	PSMC1 ▸	EIF4E ▸	PSMB5 ▸	MRPS34 ▸	FBXW8 ▸
CCT5 ▸	IPO4 ▸	PSMA3 ▸	PSMC3 ▸	HSPD1 ▸	DCP1A ▸	IGF2BP1 ▸
RNGTT ▸	PRPF6 ▸	WAPAL ▸	MCM7 ▸	CYR61 ▸	DDX1 ▸	PSMA2 ▸
TUBA4A ▸	ATP5C1 ▸	EXOSC1 ▸	TRRAP ▸	BCR ▸	NEK9 ▸	RPP30 ▸
CCT8 ▸	GTF3C2 ▸	RNH1 ▸	TOP1 ▸	DXO ▸	CEPT1 ▸	MSH3 ▸
EXOSC6 ▸	SUCLG1 ▸	DDX6 ▸	DNAJA2 ▸	EXOSC8 ▸	DYNC1H1 ▸	CCAR2 ▸
MYO9B ▸	SEC61A1 ▸	SHOC2 ▸	GSG2 ▸	CSE1L ▸	NDUFS1 ▸	ZNF121 ▸
HNRNPA0 ▸	HUWE1 ▸	TMPO ▸	DDX20 ▸	NDUFA8 ▸	DDX3X ▸	HSPH1 ▸
NCBP2 ▸	LDHA ▸	CCT3 ▸	IQGAP3 ▸	MYBBP1A ▸	SMARCC1 ▸	XPO1 ▸
SKIV2L ▸	PTGES2 ▸	XRCC6 ▸	MMS19 ▸	HADHB ▸	SQSTM1 ▸	ALDOA ▸
TTC27 ▸	PPP1CA ▸	TUBGCP2 ▸	ATP5J2 ▸	POLE ▸	CDK1 ▸	CCT6A ▸
LSM10 ▸	SQRDL ▸	UBC ▸	DHX15 ▸	GTF3C3 ▸	DHX32 ▸	NCL ▸
PABPC4 ▸	RFC5 ▸	AP1G2 ▸	MKI67IP ▸	EP400 ▸	RAF1 ▸	EFTUD2 ▸
PSMD4 ▸	NONO ▸	IPO9 ▸	ARL1 ▸	MYC ▸	XPOT ▸	MRPS22 ▸
CENPBD1 ▸	COPG2 ▸	EIF4E1B ▸	PSMB4 ▸	GTF3C1 ▸	RPN2 ▸	NCBP2L ▸
PATL1 ▸	TAZ ▸	KIAA0020 ▸	ATP2A2 ▸	SIRT7 ▸	POLD1 ▸	KPNA2 ▸
PSMC6 ▸	FBL ▸	IRAK1 ▸	PPP6C ▸	XPO5 ▸	DIMT1 ▸	NDUFS2 ▸
SNRNP200 ▸	EIF4A1 ▸	PSMC4 ▸	ALDH1B1 ▸	YWHAQ ▸	DDX52 ▸	IDH3B ▸
ERCC3 ▸	IKBKAP ▸	ILVBL ▸	IRS4 ▸	SMARCD2 ▸	PSMD2 ▸	ARHGEF2 ▸
UBE3C ▸	RPN1 ▸	SLC25A12 ▸	POLR2A ▸	PSMD3 ▸	STAM2 ▸	MSH2 ▸
SMC4 ▸	PSMB3 ▸	ZNF281 ▸	HIGD1A ▸	TUBG1 ▸	SARS ▸	IPO13 ▸
HEATR1 ▸	HSPB1 ▸	PSMA7 ▸	RFC3 ▸	RUVBL1 ▸	P4HA1 ▸	VWA5B2 ▸
NMD3 ▸	RANBP2 ▸	NDUFS3 ▸	IDH3G ▸	TRMT1L ▸	GTF3C4 ▸	GTF2I ▸
SPTLC1 ▸	YWHAB ▸	PSMA5 ▸	GCN1L1 ▸	LONP1 ▸