UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	str-118	F57A8.3	0	chrV 10,052,955	C. elegans STR-118 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
2	clec-18	F56H6.8	n/a	chrI 12,302,280	C. elegans CLEC-18 protein; contains similarity to Pfam domains PF00431 (CUB domain) , PF00059 (Lectin C-type domain) (2)contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
3	F53G2.1	F53G2.1	n/a	chrII 2,492,698	contains similarity to Interpro domain IPR001611 (Leucine-rich repeat)
4	Y53C12B.2	Y53C12B.2	n/a	chrII 9,740,855	contains similarity to Pfam domain PF00013 KH domain contains similarity to Interpro domains IPR004087 (K Homology), IPR004088 (K Homology, type 1)
5	M03F8.6	M03F8.6	n/a	chrV 5,954,355	contains similarity to Interpro domains IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding)
6	T25B6.3	T25B6.3	n/a	chrX 9,027,882
7	C35A11.3	C35A11.3	n/a	chrV 5,374,943	contains similarity to Homo sapiens Uncharacterized protein MUC5AC (Fragment); ENSEMBL:ENSP00000371671
8	str-208	F26G5.2	1e-16	chrV 4,957,686	C. elegans STR-208 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
9	C17D12.3	C17D12.3	n/a	chrI 11,618,529	contains similarity to Pfam domain PF04721 Domain of unknown function (DUF750) contains similarity to Interpro domain IPR006588 (Protein of unknown function PAW)
10	lim-7	C04F1.3	n/a	chrI 5,721,019	lim-7 encodes a LIM homeodomain protein; a lim-7 mutation can result in lethality or sterility; lim-7 reporter fusion are specifically expressed in the somatic gonadal sheath cells during the L4 larval stage and continuing through adulthood.
11	F47G4.6	F47G4.6	n/a	chrI 14,060,105	contains similarity to Pfam domain PF00505 HMG (high mobility group) box contains similarity to Interpro domains IPR000910 (High mobility group box, HMG1/HMG2), IPR009071 (High mobility group box, HMG)
12	nhr-198	K06B4.8	n/a	chrV 15,695,079	C. elegans NHR-198 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
13	T02G5.2	T02G5.2	n/a	chrII 7,095,853	contains similarity to Interpro domains IPR011992 (EF-Hand type), IPR002048 (Calcium-binding EF-hand), IPR001023 (Heat shock protein Hsp70)
14	K12B6.7	K12B6.7	n/a	chrV 6,297,759
15	sdz-35	ZC239.12	n/a	chrII 3,208,304	C. elegans SDZ-35 protein; contains similarity to Pfam domain PF02214 K+ channel tetramerisation domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation)
16	K10B4.1	K10B4.1	n/a	chrII 137,530	contains similarity to Pfam domain PF03098 Animal haem peroxidase contains similarity to Interpro domains IPR010255 (Haem peroxidase), IPR002007 (Haem peroxidase, animal)
17	C55A1.9	C55A1.9	n/a	chrV 15,626,819	contains similarity to Interpro domain IPR000694 (Proline-rich region)
18	srd-12	C39H7.6	n/a	chrIV 5,629,500	C. elegans SRD-12 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001073 (Complement C1q protein)
19	str-76	C01B4.10	0.00000000000003	chrV 2,514,913	C. elegans STR-76 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
20	F55F1.2	F55F1.2	n/a	chrX 2,769,819
21	R160.6	R160.6	n/a	chrX 4,372,098
22	tbx-38	C24H11.3	n/a	chrIII 11,785,014	tbx-38 encodes a T box transcription factor; during embryonic development, tbx-38 functions redundantly with tbx-37 to effect Notch-mediated pharyngeal mesoderm induction in descendants of the ABa blastomere; in addition, tbx-38 and tbx-37 are required for proper cell fate specification of other ABa descendants, such as those that give rise to hypodermal tissue; TBX-38 expression appears to be limited to the 8 ABa descendents at the 24-cell stage of embryogenesis, with expression diminishing markedly during the next cell cycle; negative regulation of TBX-38 expression in ABp descendants depends upon Notch signaling, while negative regulation of expression in EMS descendents is likely controlled, in part, by ref-1 and unc-37, which encode bHLH and Groucho-like proteins, respectively.
23	K02F6.6	K02F6.6	n/a	chrII 2,530,385	contains similarity to Pfam domain PF02214 K+ channel tetramerisation domain contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation)
24	F55A4.3	F55A4.3	n/a	chrX 1,023,626
25	sru-12	Y45F10B.5	n/a	chrIV 13,583,783	C. elegans SRU-12 protein; contains similarity to Pfam domain PF02688 Domain of unknown function DUF215 contains similarity to Interpro domain IPR003839 (Protein of unknown function DUF215)
26	F28B3.4	F28B3.4	n/a	chrI 4,937,314	contains similarity to Pfam domain PF06464 DMAP1-binding Domain contains similarity to Interpro domains IPR010506 (DMAP1-binding), IPR005398 (Tubby, N-terminal)
27	srx-134	F09F3.7	n/a	chrV 13,855,910	C. elegans SRX-134 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
28	Y56A3A.33	Y56A3A.33	n/a	chrIII 12,001,104	contains similarity to Pfam domain PF00929 Exonuclease contains similarity to Interpro domains IPR013520 (Exonuclease, RNase T and DNA polymerase III), IPR006055 (Exonuclease), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
29	sri-25	C41G6.10	n/a	chrV 15,218,422	C. elegans SRI-25 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
30	W04D2.5	W04D2.5	n/a	chrV 12,493,975	contains similarity to Pfam domain PF00411 Ribosomal protein S11 contains similarity to Interpro domain IPR001971 (Ribosomal protein S11)
31	Y57A10B.6	Y57A10B.6	n/a	chrII 12,391,276	contains similarity to Pfam domain PF07149 Pes-10 contains similarity to Interpro domain IPR009819 (Pes-10)
32	K10C3.4	K10C3.4	n/a	chrI 9,861,391	contains similarity to Xenopus laevis Transmembrane protein 98.; SW:Q6INX1
33	C05G5.5	C05G5.5	n/a	chrX 14,758,374	contains similarity to Homo sapiens hypothetical protein; ENSEMBL:ENSP00000360931
34	lin-32	T14F9.5	n/a	chrX 2,229,639	lin-32 encodes a basic helix-loop-helix transcription factor that is required for development of several types of neurons, including the touch receptor neurons and the male sensory ray neurons.
35	C06C3.7	C06C3.7	n/a	chrII 9,385,835	contains similarity to Saccharomyces cerevisiae Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases (Mes1p and Ygl245wp), delivering tRNA to them, stimulating catalysis, and ensuring their localization to the cytoplasm; also binds quadruplex nucleic acids; SGD:YGL105W
36	R03A10.1	R03A10.1	n/a	chrX 15,430,484	contains similarity to Saccharomyces cerevisiae Protein involved in transcription-coupled repair nucleotide exicision repair of UV-induced DNA lesions; homolog of human CSB protein; SGD:YJR035W
37	skr-19	R12H7.3	n/a	chrX 13,224,084	The skr-19 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-19(RNAi) animals are at least superficially normal.
38	sri-19	Y69E1A.6	n/a	chrIV 10,960,112	C. elegans SRI-19 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
39	F56C3.3	F56C3.3	n/a	chrX 1,358,147
40	F54B11.5	F54B11.5	n/a	chrX 13,595,020	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR011016 (Zinc finger, variant RING-type)
41	clec-231	C29F3.4	n/a	chrV 15,350,031	C. elegans CLEC-231 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
42	C24A3.8	C24A3.8	n/a	chrX 9,006,620
43	srx-73	F41F3.7	n/a	chrV 4,664,669	C. elegans SRX-73 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
44	sra-23	T06G6.1	n/a	chrI 12,704,070	C. elegans SRA-23 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
45	K01A6.5	K01A6.5	n/a	chrIV 11,743,140	contains similarity to Homo sapiens Splice isoform 1 of Q14202 Zinc finger protein 261; ENSEMBL:ENSP00000322845
46	F41C3.6	F41C3.6	n/a	chrII 4,735,969
47	srh-223	F47C12.3	n/a	chrIV 3,982,749	C. elegans SRH-223 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
48	gpa-7	R10H10.5	n/a	chrIV 10,406,114	gpa-7 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that affects egg laying and response to water- soluble odorants; it is expressed in excitable cells.
49	F23C8.12	F23C8.12	n/a	chrI 2,451,478
50	nas-16	K03B8.1	n/a	chrV 11,392,697	nas-16 encodes an astacin-like metalloprotease.