Affine Alignment
 
Alignment between HOXA5 (top ENST00000222726.4 270aa) and HOXD8 (bottom ENST00000313173.6 290aa) score 5928

001 MSSYFVNSFCGRYP-------------NGPDYQLHNY----GDHSSVS---EQFRDSASM 040
    |||||||    +|              |   |  |      | |++ +   + + +||+ 
001 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG 060

041 HSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTH-SPQPD 099
            +     |   ||+|  |   | + |      +||    + |    |  | | 
061 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP 120

100 PLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQ 159
    | ||  +|   |  +   | ++|      +    +  +   +   ++    || |    |
121 PPPCGGIA-CHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGED-PDHLNQ 178

160 ASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRY 219
    +|+ |          |++||||           |  +| |  |+|+||||||||| || |
179 SSSPS----------QMFPWMRPQ-------AAPGRRRGRQTYSRFQTLELEKEFLFNPY 221

220 LTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDN 254
    |||+||||++||| |+|||+|||||||||||||+|
222 LTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256