Affine Alignment
 
Alignment between HOXA5 (top ENST00000222726.4 270aa) and HOXB4 (bottom ENST00000332503.6 251aa) score 7752

049 YNGMDLSVGRSGSGHFGSGERAR-SYAASAS----AAPAEPRYSQPATSTHSPQPDPLPC 103
    |+  |        |++  |+|   |+   |     ||    ||+  |     | | | | 
023 YSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAACTVQRYA--ACRDPGPPPPPPPP 080

104 SAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQ 163
        | ||          ||  + |   ||+  +    |    + +    |    |    
081 PPPPPPPG----------LSPRAPAPPPAGA--LLPEPGQRCEAVSSSPPPPPCAQNPLH 128

164 SEPSPAPPAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLT 221
      || +   +| +||||||+|+|  + |  | | ||+|||||| | ||||||||+|||||
129 PSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLT 188

222 RRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 267
    ||||+|||||||||||||||||||||||||||+|| +  + + | |
189 RRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA 234