Affine Alignment
 
Alignment between HOXA5 (top ENST00000222726.4 270aa) and HOXA4 (bottom ENST00000360046.10 320aa) score 7353

070 ARSYAASASAAPAEP-RYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGA 128
    |  | |  +|  | |  |   |+    |||+  |  |  |+ |  + |  +  |      
087 AALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQP 146

129 SADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHIS-- 186
     |   +          |       +  +     |   |      +| +||||+|+|+|  
147 RAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAV 206

187 HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNR 246
    + +  | | ||+|||||| | ||||||||||||||||||||||| |||||||+|||||||
207 NPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNR 266

247 RMKWKKDNKLKSMSMAAAGGA 267
    |||||||+|| +  | ++  |
267 RMKWKKDHKLPNTKMRSSNSA 287