Affine Alignment
 
Alignment between HOXA6 (top ENST00000222728.3 233aa) and HOXD11 (bottom ENST00000249504.7 338aa) score 3648

114 DSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKE 173
    + | | |+    |    | +| | |   |   |               ||+||  |||+|
239 EGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRC--------------PYTKYQIRELERE 284

174 FHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
    | || |+ + +|++++  | ||+||+|||||||||| || |+
285 FFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNR 326