Affine Alignment
 
Alignment between HLA-DOA (top ENST00000229829.7 250aa) and HLA-DOB (bottom ENST00000438763.7 273aa) score 2888

111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
    | | ||| |+    | | |+| | |   +|  | | |  |||    ||  |      |  
121 VQPEVTVYPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWT 180

171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
    |+    |   |    || | |+|  | +|+   |  |        +  +   |   +||+
181 FQTVVMLEMTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFL---LGLI 237

231 GFLVGTVL 238
      ||| |+
238 FLLVGIVI 245