Affine Alignment
 
Alignment between PCDHB5 (top ENST00000231134.8 795aa) and PCDHGA2 (bottom ENST00000394576.3 932aa) score 31179

004 ALAKTPQKRQVMFLAILL-LLWEAGSEAVRYSIPEETESGYSVANLAKDLGLGVGELATR 062
    || | |  |+++ |  ||  |||| +  +|||+ || + |  | |+||||||    || +
003 ALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQ 062

063 GARMHYKGNKELLQLDIKTGNLLLYEKLDREVMCGATEPCILHFQLLLENPVQFFQTDLQ 122
    | |+  +|  +|  |+ ++|+|+   ++||| +|  + ||+|+| +|||+ +  +  +++
063 GVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVE 122

123 LTDINDHAPEFPEKEMLLKIPESTQPGTVFPLKIAQDFDIGSNTVQNYTISPNSHFHVAT 182
    +|||||+|| |  +|+ ||| |+| ||   ||| | | |+| | +| | ++|| || +  
123 ITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDV 182

183 HNRGDGRKYPELVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDNAPEF 242
        || |||||||+++|||||     | | | ||| |  |||+ | + ||| ||||| |
183 RRGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVF 242

243 LQSFYEVQVPENSPLNSLVVVVSARDLDAGAYGSVAYALFQG-DEVTQPFVIDEKTAEIR 301
     |  | + +|||+ + + ++ |+| | | | |  | | | +   | ++ | +   + |+ 
243 TQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELT 302

302 LKRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTM-STLSSPTPENAP 360
    + + ||+|   ++ ++| | || ||  +  | + |+||||||||  | |  || + ++ |
303 IIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLP 362

361 ETVVAVFSVSDPDSGDNGRMICSIQNDLPFLLKPTLKNFYTLVTQRTLDRESQAEYNITI 420
     |++ +|+| | ||| |    ||+  |||| |+ ++ |+| ||| | ||||  + ||||+
363 GTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITL 422

421 TVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSG 480
    |  | | | | |+ +| + |+|+|||||||++|||+ ++ |||     + ||+| | || 
423 TAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSN 482

481 TNAQVTYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPAL 540
     || ||||          |+| +|||+| | |+|||| ||| |+  +  | | | |+| |
483 DNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPL 542

541 SSEALVRVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 599
    ||   + + ||| |||+| +|||      +   || ||+|||||||||||||| ||||||
543 SSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNA 602

600 WLSYQLLKATEPGLFSMWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 659
    |||| ||||+||||||+  | ||||||| | +||| |  ||| ++|+|+|| ||| || |
603 WLSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTV 662

660 LLVDGFSQPYLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RS 716
     + |        |    |+    || ||+|||||+|+|| +||  |++ +| || |  +|
663 AVADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKS 722

717 RAAPVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCLTGDSGAGEFKFLKP 768
    |       |+  |    | | | |     |+| +|| || ||      | +|
723 RLLQASGGSL-TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773