Affine Alignment
 
Alignment between CDX1 (top ENST00000231656.13 265aa) and HOXB9 (bottom ENST00000311177.7 250aa) score 3724

017 PARPASLGLGPQAYGPPAPPPAPPQYPDFSSY--SHVEPAPAPPTAWGAPFPAPKDDWAA 074
    |  | + |  |  | |   |   |  |  | |  + +||||    | |    | | +   
065 PLSPHASGSLPSVYHPYIQPQGVP--PAESRYLRTWLEPAPRGEAAPGQGQAAVKAE-PL 121

075 AYGPGPAAPAASPA-SLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPY 133
       ||      +|  ||      +       || |   + +   |      |    |+  
122 LGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICE---GSEDKERPDQTNPSA- 177

134 EWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGL 193
     |+               |+  | |  || +| ||||||| ++ |+|  |+ |+|  | |
178 NWLH-------------ARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNL 224

194 TERQVKIWFQNRRAKERKVNKKKQQQ 219
    +|||||||||||| | +|+||++ ++
225 SERQVKIWFQNRRMKMKKMNKEQGKE 250