Affine Alignment
 
Alignment between CDX1 (top ENST00000231656.13 265aa) and CDX2 (bottom ENST00000381020.8 313aa) score 10621

001 MYVGYVLDKDSPVYPGPAR-PASLGLGPQAYGPPAPPPAPPQYPDFSSY---------SH 050
    ||| |+||||  +||   |    | | || +       +||||||+  |         ++
001 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN 054

051 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAA----------SP-ASLAFGPPPDF 098
    ++ | +|  +| | + || ++||   | || || ||          || |++ +  | |+
055 LDSAQSPGPSWPAAYGAPLREDW-NGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY 113

099 SP----------VPAPPGPGPGLLAQPLGGPGTPS--------SPGAQRPTPYEWMRRSV 140
     |            | |    |||     ||  |+        ||| ||    ||||+  
114 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP- 172

141 AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI 200
    |    |   |||||||||||||||||||||||||||||||||||+|||| |||+||||||
173 AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI 232

201 WFQNRRAKERKVNKKK---QQQQQPPQPP 226
    |||||||||||+||||   ||||||||||
233 WFQNRRAKERKINKKKLQQQQQQQPPQPP 261