Affine Alignment
 
Alignment between HOXB8 (top ENST00000239144.5 243aa) and HOXD1 (bottom ENST00000331462.6 328aa) score 3439

045 GGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQ---RQSLFGAQD 101
    |||  | +    |  | | | +          |  |+|| |              |    
128 GGSHVHYATSAVFSGGGSFLLSGQVD-----YAAFGEPGPFPACLKASADGHPGAFQTAS 182

102 PDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRG------------ 149
    |    |    ++ ||||          |+    | ||+ +  | ++              
183 PAPGTYPK-SVSPASGL----------PAAFSTFEWMKVKRNASKKGKLAEYGAASPSSA 231

150 -RQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNK 207
     |  +|  |  |||||| || |||| ||||+++ | | + |||||||||||| ||   +
232 IRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRERE 290