Affine Alignment
 
Alignment between HOXA7 (top ENST00000242159.5 230aa) and HOXD8 (bottom ENST00000313173.6 290aa) score 6232

003 SSYYVNALFSKYTAGASLFQNA----EPT--SCSFAPN---------SQRSGYGAGAGAF 047
    |||+|| |+||| | |+    |     ||   | |||          +    ||  |  |
002 SSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGF 061

048 ASTVPGLYNVNSPLYQSPFASGYGLG-----ADAY----GNLPCASYD-----------Q 087
        |     ++  + ||  || | |        |    |  | |+|             
062 PHAPP---QAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPP 118

088 NIPGLCSDLA----------------------------------KGACDKTDEGALH-GA 112
      |  |  +|                                  | +     |   |   
119 PPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQ 178

113 AEANFRIYPWMR-SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 171
    + +  +++||||  + | |+||||||+|+||||||||| || ||||+||||++||| |||
179 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE 238

172 RQIKIWFQNRRMKWKKE-HKDEGPTA-AAAPEGAVPSAAATAAADKAD 217
    ||+|||||||||||||| +||+ | +     +|     |     |+|+
239 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAE 286