Affine Alignment
 
Alignment between HOXD9 (top ENST00000249499.8 352aa) and HOXA6 (bottom ENST00000222728.3 233aa) score 4674

168 PAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPG 227
    | ||+  +++    |  |    +   ||   ++ |   |+  + |  +|  +    +| |
037 PFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASY--EYGASCFYSDKDLSGASPSGSG 094

228 AGIGAATGTGGSSEPSACSDHPI-PGCSLKEE--EKQHSQPQQQQLDPNNPAANWIHARS 284
       |       | |     |     | +| +|  +++++ |    +   |  |  ++   
095 KQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSH 154

285 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
     |+ |  ||+|||||||||| || |||| || |+|  | |||||+|||||||||| || +
155 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214

345 K 345
    |
215 K 215