Affine Alignment
 
Alignment between HOXD9 (top ENST00000249499.8 352aa) and HOXA7 (bottom ENST00000242159.5 230aa) score 4807

179 SSSTSLSSSSKRTECSVARESQ-----------GSSGPE-FSCNSFLQEKAAAATGGTGP 226
    ++  ||  +++ | || |  ||            |+ |  ++ || | +   |+  | | 
015 TAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPLYQSPFASGYGLGA 074

227 GAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTR 286
     |       +   + |  |||     |   +|   |        + |     |+ +    
075 DAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHG-----AAEANFRIYPWMRSSGPD 129

287 KK--RCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
    +|  |  ||+|||||||||| || |||| || |+|  | |||||+|||||||||| ||  
130 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 189

345 KEKCP 349
    |++ |
190 KDEGP 194