Affine Alignment
 
Alignment between HOXD9 (top ENST00000249499.8 352aa) and HOXA10 (bottom ENST00000283921.5 410aa) score 7182

039 GPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSA--SWSAVPSQPPAAAAMSGLY 096
    ||| |  |  |      |   | +  |||||      |+   + +    |  +|  + | 
132 GPPPPPQQQPPP--PPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELA 189

097 -HPYVPPPPLAASASEPGRYVRSWMEPLPGF------PGGAGGGGGGGGGGPGRGPSPGP 149
      |  |||   |  +  |        |+||+       | | | | ||||    |  | |
190 PFPRGPPPDGCALGTSSG-------VPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFP 242

150 SGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSC 209
    + |  || + + |                    +|+| |       ||+ +    |    
243 AQPP-GRGFDLPP--------------------ALASGS----ADAARKERALDSP---- 273

210 NSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQ 269
                    |    |+  |+ |  |  | |       |    |   + |++  
274 --------------PPPTLACGSGGGSQGDEEAHA-SSSAAEELSPAPSESSKASPEKDS 318

270 L--DPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTER 327
    |       ||||+ |+| |||||||||+|||||||||||||||||+|| |++| ++||+|
319 LGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDR 378

328 QVKIWFQNRRMKMKKMSKE 346
    ||||||||||||+|||++|
379 QVKIWFQNRRMKLKKMNRE 397