Affine Alignment
 
Alignment between HOXD9 (top ENST00000249499.8 352aa) and HOXD8 (bottom ENST00000313173.6 290aa) score 4180

053 ADGPAATAAE-----FASCSFAP----RSAVFSA-------SWSAVPSQPPAAAAMSGLY 096
    |   || | |     +  | |||    | |  +|       | +  |  || | |     
016 AAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPHAPPQAHA----- 070

097 HPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGR 156
    ||+  |||            + +  |          |||         | | |  |    
071 HPHPSPPPSGTGCGGREGRGQEYFHP----------GGGSPAAAYQAAPPPPPHPP---- 116

157 HYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEK 216
         |     |    |     +      +  ++   +  +|++    |+  | |     
117 -----PPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPD--CKS----- 164

217 AAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPA 276
       ++|  |               +|    ||            | | |  |      | 
165 ---SSGNIG--------------EDP----DH----------LNQSSSP-SQMFPWMRPQ 192

277 ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNR 336
    |    |   |+ |  |+++|||||||||||| |||| || ||+  | |||||||||||||
193 A----APGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNR 248

337 RMKMKK-MSKEKCP 349
    ||| ||  +|+| |
249 RMKWKKENNKDKFP 262