Alignment between HOXD9 (top ENST00000249499.8 352aa) and HOXA13 (bottom ENST00000649031.1 388aa) score 4313

035 AARFGPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSG 094
    ||  |  | |     |  | |  + ||  |+ + |  +   +      |  | ||+| | 
048 AAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSS 107

095 LYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGG--GPGRGPSPGPSGP 152
          ||   ||+|+       +      | || ||  |        |    +   |||
108 A-PGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGP 166

153 ANGRH----YGIKPETRAAPAP---ATAASTTSSSSTSLSSSSKRTECSVARESQGSSGP 205
    |   +     |  |  |  | |    + |   |+++ +  +         | |   |   
167 AALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAK 226

206 EFSCNSFLQEKAAAATGGTGPGAG---IGAATGTGGSSEPSACSDHPIPGCSLKEEE--- 259
    ||+   + |  ||       |  |   +    | ||  |    | |   |  ++  +   
227 EFA--FYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGE----SRHEPLGLPMESYQPWA 280

260 ------------KQHSQP----QQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKE 303
                |+ +||    +    |  +  ++    |  |||| |||| |  |||+|
281 LPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELERE 340

304 FLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343
    +  | ++|+|+|  ++   ||+|||| |||||||+| ||+
341 YATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 380