Affine Alignment
 
Alignment between PER2 (top ENST00000254657.8 1255aa) and CLOCK (bottom ENST00000513440.6 846aa) score 2698

115 LKELKVHLPADKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSEGHPCGADVPSYT 174
    +|||   || + +   |++ |      ||  |++ |  +  ++    +  |       +|
054 IKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEI--RQDWKPTFLSNEEFT 111

175 VEEMESVTSEHIVKNADMFAVAVSLVSGKILYISDQVASIFHCKRDAFSDAKFVEFLAPH 234
       +|++         | | +|+ +  | |+|+|+ | |+         |     |+   
112 QLMLEAL---------DGFFLAI-MTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEG 161

235 DVGVFHSFTSPYKLPLWSMCSGADSFTQECMEEKS---FFC---RVSVRKSHENEIRYHP 288
    +    +   | + |        +|| | | ++ |+   | |   | ++     +   |  
162 EHSEVYKILSTHLLE-------SDSLTPEYLKSKNQLEFCCHMLRGTIDPKEPSTYEYVK 214

289 F---RMTPYLVKVRDQQGAESQL-----------CCLLLAERVHSGY---EAPRIPPEKR 331
    |     +   |      | |  +            | +   |+ +     |   +     
215 FIGNFKSLNSVSSSAHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNE 274

332 IFTTTHTPNCLFQDVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQSGGQ 391
     ||+ |+    |  +| || |++|||| +++ |      |  |   +   |+ ++| |  
275 EFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKG 334

392 PFDYSPIRFRARNGEYITLDTSWSSFINPWSRKISFIIGRHKV---------RVGPLNED 442
       |   ||  +  ++| | | +    + |+ +  ||+  | |         |   |  +
335 KSCY--YRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIE 392

443 VFAAHPCTEEKALHPSIQELTEQIHRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSD 502
            ++     |   +     +  |+   || +    |  |  |    +|  ||+ 
393 ESLPETAADKSQDSGSDNRINTVSLKEALERFDHSPTPSASSRSSRKSSHTAVSDPSSTP 452

503 SNGHED-SRRRRAEICKNGNKTKNRSHYSHES------GEQKKKSVTEMQTNPP 549
    +    | |   |  +  +    + || +| +|      |    + |    || |
453 TKIPTDTSTPPRQHLPAHEKMVQRRSSFSSQSINSQSVGSSLTQPVMSQATNLP 506