Affine Alignment
 
Alignment between CHL1 (top ENST00000256509.7 1224aa) and NCAM2 (bottom ENST00000400546.6 837aa) score 5700

015 MFLLLKFSKAIEIPSSVQQVPTI-IKQSKVQVAFPFDEYFQIECEAKGNPEPTFSWTKDG 073
    | ||| |     + || | +  + |  |||+++    ++|   | | | || +  |    
001 MSLLLSFYLLGLLVSSGQALLQVTISLSKVELSVGESKFF--TCTAIGEPE-SIDWYNPQ 057

074 NPFYFTDHRIIPSNNSGTFRIPNEGHISHFQGKYRCFASNKLGIAMSEEIEFIVPSVPKF 133
         +  |++        |+          | ||| |++  |   ++|   ++    | 
058 GEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG--QTQEATVVLEIYQKL 115

134 P-KEKIDPLEVEEGDPIVLPCNPPKGLPPLHIYWM--NIELEHIEQDERVYMSQKGDLYF 190
      +| + | | ++|+   + |       |  + |+  | |+  |  | |  |    +|  
116 TFREVVSPQEFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTI-SDNRFAMLANNNLQI 173

191 ANVEEKDSRNDYCCFAAFPRLRTIVQKMPMKLTVNSLKHANDSSSSTEIGSKANSIKQRK 250
     |+ + |    | |       |  +    + + ||                         
174 LNINKSD-EGIYRCEGRV-EARGEIDFRDIIVIVN------------------------- 206

251 PKLLLPPTESGSESSI--TILKGEILLLECFAEGLPTPQVDWNKIGGDLPKGRETKENY- 307
        +||  |  + |   |  +|| +   | | | | | + | + |    |  |  | | 
207 ----VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNG----KLIEENEKYI 258

308 ----GKTLKIENVSYQDKGNYRCTASNFLGTATHDFHVIVEEPPRWTKKPQSAVYSTGSN 363
           | + |+   | | | | |+|  |       + |   |   +      |  |  
259 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENG-Q 317

364 GILLCEAEGEPQPTIKWRVNGSPVDNHPFA-GDVVFPREIS-----------FTNLQPNH 411
      |+|+||||| | | |+     ||   |  ||      |              +++ + 
318 VTLVCDAEGEPIPEITWK---RAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD 374

412 TAVYQCEASNVHGTILANANIDVVDVRPLIQTKDGENYATVVGYSAFLHCEFFASPEAVV 471
    +  | |||++  |    +  +|+      |  +    | +  |    + |+  ++| | +
375 SGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQ--TIYYSWEGNPINISCDVKSNPPASI 432

472 SWQKVEEVKPLEG----RRYHIYENGTLQINRTTEEDAGSYSCWVENAIG---KTAVTAN 524
     |++ + | | +     + |       |+|  |++ | | |+|   | ||   +  + | 
433 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 492

525 LDIRNATKLRVSPKNPRIPKLHMLELHCE-SKCDSH----LKH---SLKLSWSKDGEAFE 576
     |+ +      ||   +| +|         +| |||    + |    +|   |+  +   
493 ADVPS------SPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR 546

577 INGTEDGRIIIDGA------NLTISNVTLEDQGIYCCSAHTALDSAADITQVTVLDVPDP 630
     +| +   ++++         + ++ |  + || |         |  +| |   +  | |
547 SHGVQT-MVVLNNLEPNTTYEIRVAAVNGKGQGDY---------SKIEIFQTLPVREPSP 596

631 PENLHLSERQNRSVRLTWEAGADHNSNISEYIVEFEGNKEEPGRWEELTRVQGKKTTVIL 690
    | ++|      +| +|+     |  + | ||||++  +|++  +| |  +||| |  +||
597 P-SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYR-SKDKEDQWLE-KKVQGNKDHIIL 653

691 P-LAPFVRYQFRVIAVNEVGRSQPS 714
      |   + |+ ++ | | +| |+|+
654 EHLQWTMGYEVQITAANRLGYSEPT 678