Affine Alignment
 
Alignment between CHRND (top ENST00000258385.8 517aa) and CHRNA1 (bottom ENST00000348749.9 457aa) score 14687

010 LLAALAVCGS---WGLNEEERLIRHLFQEKGYNKELRPVAHKEESVDVALALTLSNLISL 066
    ||   ++| +    |   | ||+  ||  | |+  +|||    + |+| + | |  ||++
006 LLLLFSLCSAGLVLGSEHETRLVAKLF--KDYSSVVRPVEDHRQVVEVTVGLQLIQLINV 063

067 KEVEETLTTNVWIEHGWTDNRLKWNAEEFGNISVLRLPPDMVWLPEIVLENNNDGSFQIS 126
     || + +|||| ++  | |  |||| +++| +  + +| + +| |++|| || || | | 
064 DEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDLVLYNNADGDFAIV 123

127 YSCNVLVYHYGFVYWLPPAIFRSSCPISVTYFPFDWQNCSLKFSSLKYTAKEITLSLKQD 186
        ||+ + | + | |||||+| | | ||+|||| ||||+|  +  |    + ++ + |
124 KFTKVLLQYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTWTYDGSVVAINPESD 183

187 AKENRTYPVEWIIIDPEGFTENGEWEIVH-RPARVNVDPRAPLDSPSRQDITFYLIIRRK 245
                  |   | |+||| |   |  + +|      |+|   |||++ +++| 
184 QP------------DLSNFMESGEWVIKESRGWKHSVTYSCCPDTP-YLDITYHFVMQRL 230

246 PLFYIINILVPCVLISFMVNLVFYLPADSGEKTSVAISVLLAQSVFLLLISKRLPATSMA 305
    ||++|+|+++||+| ||+  |||||| ||||| +++|||||+ +||||+| + +|+|| |
231 PLYFIVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSA 290

306 IPLIGKFLLFGMVLVTMVVVICVIVLNIHFRTPSTHVLSEGVKKLFLETLPELLH---MS 362
    +|||||++|| || |   ++| |||+| | |+|||||+   |+|+|++|+| ++    | 
291 VPLIGKYMLFTMVFVIASIIITVIVINTHHRSPSTHVMPNWVRKVFIDTIPNIMFFSTMK 350

363 RPAEDGPSPGALVRRSSSLGYISKAEEYFLLKSRSDLMFEKQSERHGLARRLTTARRPPA 422
    ||+ +                  + ++ |      |+     | + |          || 
351 RPSRE-----------------KQDKKIF----TEDIDISDISGKPG----------PPP 379

423 SSEQAQQELFNELKPAVDGANFIVNHMRDQNNYNEEKDSWNRVARTVDRLCLFVVTPVMV 482
        +      |+| |++|  +|   |+     |     |  ||  +| + | |   | +
380 MGFHSPLIKHPEVKSAIEGIKYIAETMKSDQESNNAAAEWKYVAMVMDHILLGVFMLVCI 439

483 VGTAWIF 489
    +||  +|
440 IGTLAVF 446