Affine Alignment
 
Alignment between MAP1LC3B (top ENST00000268607.10 125aa) and MAP1LC3A (bottom ENST00000360668.8 121aa) score 9899

001 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 060
    |||++ |||||+|  | ++|+ ||+|||+|||||||||||||||||||||||||||||||
001 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 060

061 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
    |||+||||||||||  |||||||| ||||||||||+++|| |||||||||||||||||||
061 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120