Affine Alignment
 
Alignment between SCUBE3 (top ENST00000274938.8 993aa) and HMCN1 (bottom ENST00000271588.9 5635aa) score 8702

0025 KAAQDVDECVEGTDNCHIDAICQNTPRSYKCI--CKSGY--TGDGKHCKDVDECEREDNA 0080
     +  ||+|||  |   ||    | ||  ||+|+  | ||+  | ||  |+|++||  ++++
5143 RTCQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINEC--QESS 5200

0081 GCVHDCVNIPGNYRCTCYDGFHLAHDGHNCLDVDECAEGNGGCQQSCVNMMGSYEC--HC 0138
      |   | |  |++ | |  |+ |   |  |+||+|| +      | | |  | |+|   |
5201 PCHQRCFNAIGSFHCGCEPGYQL--KGRKCMDVNECRQNVCRPDQHCKNTRGGYKCIDLC 5258

0139 REGFFLSDNQHTCIQRPEEGMNCMNKNHGCAH--ICRETPKGGIACECRPGFELTKNQRD 0196
       |   ++|  |||   |    | +  | | +  ||  | +|   | |  |+      | 
5259 PNGMTKAEN-GTCIDIDE----CKDGTHQCRYNQICENT-RGSYRCVCPRGYRSQGVGRP 5312

0197 CK--LTCNYGNGGCQHTCDDTEQGPRCGCHIKFVLHTDGKTCIETCAVNNGGCDSKCHDA 0254
     |     |      | | | +|    +| |     |  |||+|     + | |     ++ 
5313 CMDINECEQVPKPCAHQCSNTPGSFKCICPPGQHLLGDGKSCAGLERLPNYGTQYSSYNL 5372

0255 A---------------------------------------TGVHCTCPVGFMLQPDRKTC 0275
     |                                         +  ||| |     |  ||
5373 ARFSPVRNNYQPQQHYRQYSHLYSSYSEYRNSRTSLSRTRRTIRKTCPEGSEASHD--TC 5430

0276 KDIDECRLNNGGCDHICRNTVGSFECSCKKGYKLLINERNCQDIDECSFDRT-C--DHIC 0332
      |||||  |   | | |+|| ||++| |  ||+|  | + |||||||      |  + +|
5431 VDIDECE-NTDACQHECKNTFGSYQCICPPGYQLTHNGKTCQDIDECLEQNVHCGPNRMC 5489

0333 VNTPGSFQCL---CHRGYLL-----YGITHCGDVD-ECSINRGGCRFGCINTP 0376
      |  ||+||+   |   |       + + +|   | ||+++     +  ++ |
5490 FNMRGSYQCIDTPCPPNYQRDPVSGFCLKNCPPNDLECALSPYALEYKLVSLP 5542