Affine Alignment
 
Alignment between HOXA10 (top ENST00000283921.5 410aa) and HOXD9 (bottom ENST00000249499.8 352aa) score 7182

132 GPPPPPQQQPPP--PPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELA 189
    ||| |  |  |      |   | +  |||||      |+   + +    |  +|  + | 
039 GPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSA--SWSAVPSQPPAAAAMSGLY 096

190 PFPRGPPPDGCALGTSSG-------VPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFP 242
      |  |||   |  +  |        |+||+       | | | | ||||    |  | |
097 -HPYVPPPPLAASASEPGRYVRSWMEPLPGF------PGGAGGGGGGGGGGPGRGPSPGP 149

243 AQPP-GRGFDLPP--------------------ALASGS----ADAARKERALDSP---- 273
    + |  || + + |                    +|+| |       ||+ +    |    
150 SGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSC 209

274 --------------PPPTLACGSGGGSQGDEEAHA-SSSAAEELSPAPSESSKASPEKDS 318
                    |    |+  |+ |  |  | |       |    |   + |++  
210 NSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQ 269

319 LGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDR 378
    |       ||||+ |+| |||||||||+|||||||||||||||||+|| |++| ++||+|
270 L--DPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTER 327

379 QVKIWFQNRRMKLKKMNRE 397
    ||||||||||||+|||++|
328 QVKIWFQNRRMKMKKMSKE 346