Affine Alignment
 
Alignment between HOXA10 (top ENST00000283921.5 410aa) and HOXD8 (bottom ENST00000313173.6 290aa) score 4655

180 KVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGG----AQQ 235
    | +| ||  |     |    |      |       | + |    + ||+   |      |
014 KAAAAAAAAAGEAINPTYYDCHFAPEVG------GRHAAAAAALQLYGNSAAGFPHAPPQ 067

236 LGAGPFPAQPP---------GRGFD-LPPALASGSA--DAARKERALDSPPPPTLACGS- 282
      | | |+ ||         ||| +   |   | +|   ||        ||||   ||  
068 AHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGI 127

283 ----------GGGSQGDEEAHASSSAAE--ELSPAPSESSKASPEKDSLGNSKGENAA-N 329
              |  +   +    +   ||  +     | |     + | |  |   +    
128 ACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFP 187

330 WL---TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQN 386
    |+    |   |+ |  |++ |||||||||||| ||||+||+|+| ++ ||+|||||||||
188 WMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQN 247

387 RRMKLKKMNRENR 399
    |||| || | +++
248 RRMKWKKENNKDK 260