Affine Alignment
 
Alignment between HOXA10 (top ENST00000283921.5 410aa) and HOXD13 (bottom ENST00000392539.4 343aa) score 3610

182 SATAAELAPFPRGPPPDGCALGT--SSGVPVPGYFRLSQAYGTAKGY----GSGGGGAQQ 235
    |+++| +|  |  ||   |   |  ++    |    |   |    ||     | | | ||
089 SSSSAVVAARPEAPPAKECPAPTPAAAAAAPPSAPALGYGYHFGNGYYSCRMSHGVGLQQ 148

236 LGAGPFPAQPPGRGFDLP-----PALASGSADA----ARKE-----RALDSP----PPPT 277
          |    | || +        ||| |  |    || +     +   ||    |   
149 NALKSSPHASLG-GFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYI 207

278 LACGSGGGSQGDEEAHASSSAAEELSPAPSESS-----KASPE-----KDSLGNSKGENA 327
        + |  +   ||+ |    +  + |   +|     |  |+     | |       | 
208 DMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQ 267

328 ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 387
     +    + ||||| |||| |  ||| |+  | ++ +++|  || + +|++||| ||||||
268 PDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNR 327

388 RMKLKKM 394
    |+| ||+
328 RVKDKKI 334