Affine Alignment
 
Alignment between HOXC9 (top ENST00000303450.5 260aa) and HOXC11 (bottom ENST00000546378.1 304aa) score 4731

131 GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEAD---ALAGSKHKEEKADLDPSNPVANWI 187
    | || +  |+    |    |  |     + | +   + +|| |   |     + |     
173 GKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAP----- 227

188 HARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKM 247
    +|  ||||||||+|+|  |||+|| ||+|+ +++| +++|+||||+||||||||||||| 
228 NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE 287

248 KKMNKEK 254
    ||+++++
288 KKLSRDR 294