Affine Alignment
 
Alignment between TMPRSS11E (top ENST00000305363.9 423aa) and TMPRSS11D (bottom ENST00000283916.11 418aa) score 16169

002 MYRPDVVRARKRVCWEPWVIGLVIFISLIVLAVCIGLTVHYVRYNQKKTYNYYSTLSFTT 061
    ||||  | +  |    |+|+  ++   +++||| | | |+++ ++| |+| | |+     
001 MYRPARVTSTSRFL-NPYVVCFIVVAGVVILAVTIALLVYFLAFDQ-KSYFYRSSFQLLN 058

062 DKLYAEFGREASNNFTEMSQRLESMVKNAFYKSPLREEFVKSQVIKFSQQKHGVLAHMLL 121
     +  ++    |+  +  +| |+||++   | +| || +|+++ | |  |   || | +++
059 VEYNSQLNSPATQEYRTLSGRIESLITKTFKESNLRNQFIRAHVAKLRQDGSGVRADVVM 118

122 ICRFHSTEDPETVDKIVQLVLHEKLQDAVGPPKVDPHSVKIKKINKTETDSYLNHCCGTR 181
      +|    +  ++   ++ || + | ++ |  +++| | +|  +      ++| + ||  
119 KFQFTRNNNGASMKSRIESVLRQMLNNS-GNLEINP-STEITSLTDQAAANWLINECGAG 176

182 RSKTLGQSLRIVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPA 241
             ||+|||| ||| |||| ||+ + +| || +|||  |+++||||| +  || 
177 PDLITLSEQRILGGTEAEEGSWPWQVSLRLNNAHHCGGSLINNMWILTAAHCFRSNSNPR 236

242 RWTASFGVTIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDA 301
     | |+ |++    |++  +| |++|  ||  +|+ ||+|  | + | +|  +| |||| |
237 DWIATSGISTTFPKLRMRVRNILIHNNYKSATHENDIALVRLENSVTFTKDIHSVCLPAA 296

302 SYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGS 361
    +    ||   +|||+|| +  |++   ||| || +|    || | +|| ||   ||||| 
297 TQNIPPGSTAYVTGWGAQEYAGHTVPELRQGQVRIISNDVCNAPHSYNGAILSGMLCAGV 356

362 LEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 421
     +|  ||||||||||||  |+| +|++ |||||||+|  |+||||||||||  |||  +|
357 PQGGVDACQGDSGGPLVQEDSRRLWFIVGIVSWGDQCGLPDKPGVYTRVTAYLDWIRQQT 416

422 GI 423
    ||
417 GI 418