Affine Alignment
 
Alignment between HOXD8 (top ENST00000313173.6 290aa) and HOXB6 (bottom ENST00000225648.4 224aa) score 6004

076 PPPSGTGCGGREG-RGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPA 134
    | | | | |  +|     |+ | ||     |  | |    | |          | + |  
040 PAPYGPGPGQDKGFATSSYYPPAGG----GYGRAAPCDYGPAP----------AFYREKE 085

135 KFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMR---- 190
              || |  +         ||       ||  +   + |+|  ++|||+    
086 SACALSGADEQPPFHPEPRKS-----DCAQDKSVFGETEE--QKCSTP--VYPWMQRMNS 136

191 ---PQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQN 247
           |  |||||||+|+||||||||| +| ||||+||||++||| |||||+||||||
137 CNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQN 196

248 RRMKWKKENNKDKFPVSRQEVKDGETKKEAQ 278
    ||||||||+   |   + |   + | +|+|+
197 RRMKWKKES---KLLSASQLSAEEEEEKQAE 224