Affine Alignment
 
Alignment between HOXD8 (top ENST00000313173.6 290aa) and HOXA7 (bottom ENST00000242159.5 230aa) score 6232

002 SSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGF 061
    |||+|| |+||| | |+    |     ||   | |||          +    ||  |  |
003 SSYYVNALFSKYTAGASLFQNA----EPT--SCSFAPN---------SQRSGYGAGAGAF 047

062 PHAPP---QAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPP 118
        |     ++  + ||  || | |        |    |  | |+|             
048 ASTVPGLYNVNSPLYQSPFASGYGLG-----ADAY----GNLPCASYD-----------Q 087

119 PPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQ 178
      |  |  +|                                  | +     |   |   
088 NIPGLCSDLA----------------------------------KGACDKTDEGALH-GA 112

179 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE 238
    + +  +++||||  + | |+||||||+|+||||||||| || ||||+||||++||| |||
113 AEANFRIYPWMR-SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 171

239 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAE 286
    ||+|||||||||||||| +||+ | +     +|     |     |+|+
172 RQIKIWFQNRRMKWKKE-HKDEGPTA-AAAPEGAVPSAAATAAADKAD 217