Affine Alignment
 
Alignment between ZNF540 (top ENST00000316433.9 660aa) and ZNF229 (bottom ENST00000614049.5 825aa) score 27512

001 MAHALVTFRDVAIDFSQKEWECLDTTQRKLYRDVMLENYNNLVSLGYS---GSKPDVITL 057
    |+   ++|+|||+ |+++| | ||+|||+||+||| ||+ ||+|+|     | |    | 
029 MSQEPLSFKDVAVVFTEEELELLDSTQRQLYQDVMQENFRNLLSVGERNPLGDKNGKDTE 088

058 LEQGKE----------PCVVARDVTGRQCPG-----LLSRHKTKKLSSEKDIHE------ 096
      | +|           | +  +| | + ||     +  + |  + | +   |+      
089 YIQDEELRFFSHKELSSCKIWEEVAG-ELPGSQDCRVNLQGKDFQFSEDAAPHQGWEGAS 147

097 ----------ISLSKESII----------------------------------EKSKTLR 112
               ||  + +|                                  |+ | | 
148 TPCFPIENFLDSLQGDGLIGLENQQFPAWRAIRPIPIQGSWAKAFVNQLGDVQERCKNLD 207

113 LKGSIFRNEWQNKS-------------EFE-----------------------GQQGLKE 136
     + ++++  | + |             | +                       |+ ||| 
208 TEDTVYKCNWDDDSFCWISCHVDHRFPEIDKPCGCNKCRKDCIKNSVLHRINPGENGLKS 267

137 -----------------RSISQKKIVSKKMSTDRKRPSFTLN--QRIHNSEKSCDS---- 173
                     |   ++|+      ++  | |  ||  ||+   |||  |    
268 NEYRNGFRDDADLPPHPRVPLKEKLCQYDEFSEGLRHSAHLNRHQRVPTGEKSVKSLERG 327

174 -------HLVQHGKID-SDVKHDCKECGSTFNNVYQLTLHQKIHTGEKSCKCEKCGKVFS 225
           |+  | +    |+ + |  ||  |     | +|| +||| +  |||+||| | 
328 RGVRQNTHIRNHPRAPVGDMPYRCDVCGKGFRYKSVLLIHQGVHTGRRPYKCEECGKAFG 387

226 HSYQLTLHQRFHTGEKPYECQECGKTFTLYPQLNRHQKIHTGKKPYMCKKCDKGFFSRLE 285
     |  | +||| |||||||+| |||| |+    |  ||++|||+||| | +| ||| ++  
388 RSSNLLVHQRVHTGEKPYKCSECGKGFSYSSVLQVHQRLHTGEKPYTCSECGKGFCAKSA 447

286 LTQHKRIHTGKKSYECKECGKVFQLIFYFKEHERIHTGKKPYECKECGKAFSVCGQLTRH 345
    | +|+ || |+| | | |||| |    +   |++ |||++||+| +||| ||    |  |
448 LHKHQHIHPGEKPYSCGECGKGFSCSSHLSSHQKTHTGERPYQCDKCGKGFSHNSYLQAH 507

346 QKIHTGVKPYECKECGKTFRLSFYLTEHRRTHAGKKPYECKECGKSFNVRGQLNRHKTIH 405
    |++| |   |+|  |||+|  |  |  |+| | |+|||+| ||||||     |+ |+ +|
508 QRVHMGQHLYKCNVCGKSFSYSSGLLMHQRLHTGEKPYKC-ECGKSFGRSSDLHIHQRVH 566

406 TGIKPFACKVCEKAFSYSGDLRVHSRIHTGEKPYECKECGKAFMLRSVLTEHQRLHTGVK 465
    || ||+ |  | | |  + ||  | |+||||+|| |  ||| |+  | |  |||+||| |
567 TGEKPYKCSECGKGFRRNSDLHSHQRVHTGERPYVCDVCGKGFIYSSDLLIHQRVHTGEK 626

466 PYECKECGKTFRVRSQISLHKKIHTDVKPYKCVRCGKTFRFGFYLTEHQRIHTGEKPYKC 525
    ||+| |||| |   | + +|+++||  |||+|  ||| ||    | +|||+|||+||| |
627 PYKCAECGKGFSYSSGLLIHQRVHTGEKPYRCQECGKGFRCTSSLHKHQRVHTGKKPYTC 686

526 KECGKAFIRRGNLKEHLKIHSGLKPYDCKECGKSFSRRGQFTEHQKIHTGVKPYKCKECG 585
     +||| |    ||+ | ++|+| ||| | |||| |        |+++||| |||+|  ||
687 DQCGKGFSYGSNLRTHQRLHTGEKPYTCCECGKGFRYGSGLLSHKRVHTGEKPYRCHVCG 746

586 KAFSRSVDLRIHQRIHTGEKPYECKQCGKAFRLNSHLTEHQRIHTGEKPYECKVCRKAFR 645
    | +|+|  |+ |||+|||||||+|++||| |  || |  |||+||||||| | || | | 
747 KGYSQSSHLQGHQRVHTGEKPYKCEECGKGFGRNSCLHVHQRVHTGEKPYTCGVCGKGFS 806

646 QYSHLYQHQKTH 657
      | |  ||+ |
807 YTSGLRNHQRVH 818