Affine Alignment
 
Alignment between IRX3 (top ENST00000329734.4 501aa) and IRX1 (bottom ENST00000302006.4 480aa) score 16226

001 MSFPQLGY-QYIRP----LYPSERPGAAGGSGGSAGARGGLGAGASELNASGSLSNVLSS 055
    |||||||| ||+       |  ||||    +  +| |      ||+||   |+ +  ++|
001 MSFPQLGYPQYLSAAGPGAYGGERPGVLAAAAAAAAAASSGRPGAAEL-GGGAGAAAVTS 059

056 VYGAPYAAAAAAAAAQGYGAFLPYAAELPIFPQLGAQYELKDSPGVQHPAAAAAFPHPHP 115
    | |  ||||   | |  | |||||||+| +| |+|+||||||+||| |||  ||  |  |
060 VLGM-YAAAGPYAGAPNYSAFLPYAADLSLFSQMGSQYELKDNPGV-HPATFAA--HTAP 115

116 AFYPYGQYQFGDPSRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVS 175
    |+|||||+|+||| ||||||||||||||||||||||||||||||||||||||||||||||
116 AYYPYGQFQYGDPGRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVS 175

176 TWFANARRRLKKENKMTWAPRSRTDEEGNAYGSEREEEDEEEDEEDGKRELELEEEELGG 235
    |||||||||||||||+||  ||+  |+|  +||+ | + |+ ++++   |++||  ++  
176 TWFANARRRLKKENKVTWGARSKDQEDGALFGSDTEGDPEKAEDDE---EIDLESIDIDK 232

236 EEEDTGGEGLADDDEDEEIDLENLDGAATEPELSLAGAARRDGDLGLGPISDSKNSDSED 295
     +|  | +   ||++  |         |     + +  ||  |     |++ +     +|
233 IDEHDGDQSNEDDEDKAE---------APHAPAAPSALARDQG----SPLAAADVLKPQD 279

296 SSEGLEDRPLPVLSLAPAPPPVAVASPSLPSPPVSLDPCAPAPAPASALQ-----KPKIW 350
    |       || +   || |    + ||                | |  ||     |||||
280 S-------PLGLAKEAPEPGSTRLLSPG---------------AAAGGLQGAPHGKPKIW 317

351 SLAETATSPDN-PRRSPPGAGGSPPGAAVAPSALQLSPAAAAAAAHRLVSAPLGKFPAWT 409
    ||||||||||  |+ |||   | |   |  |||       |   +| | +  +|||  ||
318 SLAETATSPDGAPKASPPPPAGHP--GAHGPSAGAPLQHPAFLPSHGLYTCHIGKFSNWT 375

410 NRPFPGPPPGPRLHPLSLLGSAPPHL------LGLPGAAGHPAA----------AAAFAR 453
    |  |     |  |+  | ||   ||       |  |     | |          |+  + 
376 NSAFLA--QGSLLNMRSFLGVGAPHAAPHGPHLPAPPPPQPPVAIAPGALNGDKASVRSS 433

454 PAEPEGGTDRCSALEVEKKLLKTAFQPV 481
    |  ||   |     +   + ||+ ||||
434 PTLPE--RDLVPRPDSPAQQLKSPFQPV 459