Affine Alignment
 
Alignment between HOXB4 (top ENST00000332503.6 251aa) and HOXA4 (bottom ENST00000360046.10 320aa) score 12654

001 MAMSSFLINSNYVDPKFPPCEEYSQSD-------------------YLPSDHSP------ 035
    | ||||||||||++||||| |||+|                       |+ | |      
001 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 060

036 -----------GYYAGGQRRESSFQPEAGFGRRAACTV---QRYAACRDPGPPPPPPPPP 081
                |||    || ++   | +    |        |     || || |  ||
061 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120

082 PPPPPPG--------LSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHP---- 129
         |         | |+ | |    |+ |   +||||  ++|  |     |  |    
121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180

130 --SPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYL 187
      ||     |||||||||+|+||| |||+| ||||||||||||||||||||||||+||||
181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240

188 TRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGR 243
    |||||+|||| |||||||+|||||||||||||||||||||+||  +| ++ ||||+
241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGK 296