Affine Alignment
 
Alignment between CHRNA1 (top ENST00000348749.9 457aa) and CHRND (bottom ENST00000258385.8 517aa) score 14687

006 LLLLFSLCSAGLVLGSEHETRLVAKLF--KDYSSVVRPVEDHRQVVEVTVGLQLIQLINV 063
    ||   ++| +    |   | ||+  ||  | |+  +|||    + |+| + | |  ||++
010 LLAALAVCGS---WGLNEEERLIRHLFQEKGYNKELRPVAHKEESVDVALALTLSNLISL 066

064 DEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDLVLYNNADGDFAIV 123
     || + +|||| ++  | |  |||| +++| +  + +| + +| |++|| || || | | 
067 KEVEETLTTNVWIEHGWTDNRLKWNAEEFGNISVLRLPPDMVWLPEIVLENNNDGSFQIS 126

124 KFTKVLLQYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTWTYDGSVVAINPESD 183
        ||+ + | + | |||||+| | | ||+|||| ||||+|  +  |    + ++ + |
127 YSCNVLVYHYGFVYWLPPAIFRSSCPISVTYFPFDWQNCSLKFSSLKYTAKEITLSLKQD 186

184 QP------------DLSNFMESGEWVIKESRGWKHSVTYSCCPDTP-YLDITYHFVMQRL 230
                  |   | |+||| |   |  + +|      |+|   |||++ +++| 
187 AKENRTYPVEWIIIDPEGFTENGEWEIVH-RPARVNVDPRAPLDSPSRQDITFYLIIRRK 245

231 PLYFIVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSA 290
    ||++|+|+++||+| ||+  |||||| ||||| +++|||||+ +||||+| + +|+|| |
246 PLFYIINILVPCVLISFMVNLVFYLPADSGEKTSVAISVLLAQSVFLLLISKRLPATSMA 305

291 VPLIGKYMLFTMVFVIASIIITVIVINTHHRSPSTHVMPNWVRKVFIDTIPNIMFFSTMK 350
    +|||||++|| || |   ++| |||+| | |+|||||+   |+|+|++|+| ++    | 
306 IPLIGKFLLFGMVLVTMVVVICVIVLNIHFRTPSTHVLSEGVKKLFLETLPELLH---MS 362

351 RPSRE-----------------KQDKKIF----TEDIDISDISGKPG----------PPP 379
    ||+ +                  + ++ |      |+     | + |          || 
363 RPAEDGPSPGALVRRSSSLGYISKAEEYFLLKSRSDLMFEKQSERHGLARRLTTARRPPA 422

380 MGFHSPLIKHPEVKSAIEGIKYIAETMKSDQESNNAAAEWKYVAMVMDHILLGVFMLVCI 439
        +      |+| |++|  +|   |+     |     |  ||  +| + | |   | +
423 SSEQAQQELFNELKPAVDGANFIVNHMRDQNNYNEEKDSWNRVARTVDRLCLFVVTPVMV 482

440 IGTLAVF 446
    +||  +|
483 VGTAWIF 489