Affine Alignment
 
Alignment between HOXA4 (top ENST00000360046.10 320aa) and HOXB4 (bottom ENST00000332503.6 251aa) score 12654

001 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 060
    | ||||||||||++||||| |||+|                       |+ | |      
001 MAMSSFLINSNYVDPKFPPCEEYSQSD-------------------YLPSDHSP------ 035

061 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120
                |||    || ++   | +    |        |     || || |  ||
036 -----------GYYAGGQRRESSFQPEAGFGRRAACTV---QRYAACRDPGPPPPPPPPP 081

121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180
         |         | |+ | |    |+ |   +||||  ++|  |     |  |    
082 PPPPPPG--------LSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHP---- 129

181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
      ||     |||||||||+|+||| |||+| ||||||||||||||||||||||||+||||
130 --SPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYL 187

241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGK 296
    |||||+|||| |||||||+|||||||||||||||||||||+||  +| ++ ||||+
188 TRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGR 243