Affine Alignment
 
Alignment between HLA-DMA (top ENST00000374843.9 261aa) and HLA-DMB (bottom ENST00000418107.3 263aa) score 2242

127 PIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVEGFGPTFVSAVDG--LSF 184
    |  +|    |    +|  | |+|   +|  +|+ |+ +   |        +|      ++
115 PSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTY 174

185 QAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAFGLGVLGI 244
    |  |+|  ||   | ++|+| |       +  | |    |   |+  +  |  |||++  
175 QTLSHLALTPSYGDTYTCVVEHTGAPEPILRDWTP-GLSPMQTLKVSVSAVTLGLGLIIF 233

245 IVGIV 249
     +|++
234 SLGVI 238