Affine Alignment
 
Alignment between FOXS1 (top ENST00000375978.5 330aa) and FOXC2 (bottom ENST00000649859.1 501aa) score 9044

009 PGAPTTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRH 068
    | ||  +  |||||||||| ||||++| ++ ||+|||++|| || ||| |+ ||||||||
064 PAAP-KDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRH 122

069 NLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSFLRRRRRFTRQTGAEGTRGPAK 128
    |||||||||||||||+||||||||||||| ++|||+|||||||||| ++  ++     | 
123 NLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVSKEKEERAH 182

129 ARRGPLRATSQDPGVPNATTGRQCSFPPELPDPKGLSFGGLVGAMPA-----SMCP-ATT 182
     +  |  |+   |  |+         | |      +       |+|      ++ | +  
183 LKEPPPAASKGAPATPHLADA-----PKEAEKKVVIKSEAASPALPVITKVETLSPESAL 237

183 DGRPRPPMEPKEISTPKPACPGELPV--ATSSSSCPAFGF---------PAGFSEAESFN 231
     | ||        |||  +  | ||   | + +  | |           | |   +    
238 QGSPR-----SAASTPAGSPDGSLPEHHAAAPNGLPGFSVENIMTLRTSPPGGELSPGAG 292

232 KA---PTPVLSP-----------------ESGIGSSYQCRLQALNFCMGAD--------P 263
    +|     |+  |                 |+|    ||| ++|++   ||+        |
293 RAGLVVPPLALPYAAAPPAAYGQPCAQGLEAGAAGGYQCSMRAMSLYTGAERPAHMCVPP 352

264 GLEHLLASAAPSPAPPTPP 282
     |+  |+     |+ || |
353 ALDEALSD---HPSGPTSP 368