Affine Alignment
 
Alignment between CDX2 (top ENST00000381020.8 313aa) and HOXB9 (bottom ENST00000311177.7 250aa) score 3686

108 SSPADYHPHHHPHHHPHHPAAAPSCASGLLQT-LNPGPPGPA------ATAAAEQL---- 156
    | |+ |||+  |          |   |  |+| | | | | |      |   || |    
073 SLPSVYHPYIQPQ-------GVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAP 125

157 --------------------------SPGGQRRNLCEW---MRKPAQQSLGSQ-VKTRTK 186
                               ||     +||      +| | +  +  +  |+ 
126 GELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSS 185

187 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
     | |  || +| ||||||| ++ |+|  |+ |+|  | |||||||||||||| | +|+||
186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245

247 KK 248
    ++
246 EQ 247