Affine Alignment
 
Alignment between TRAV39 (top ENST00000390466.1 110aa) and TRAV6 (bottom ENST00000390428.3 132aa) score 4085

007 MILWLQLDRLSGELKVEQNPLFLSMQEGKNYTIYCNYSTTSDR-LYWYRQDPGKSLESLF 065
    +|||||+| +  + |+|||   |++||||  |+ |||+  |   | |||||||+    | 
029 LILWLQVDWVKSQ-KIEQNSEALNIQEGKTATLTCNYTNYSPAYLQWYRQDPGRGPVFLL 087

066 VLLSNGAVKQEGRLMASLDTKARLSTLHITAAVHDLSATYFCAVD 110
    ++  |   |++ ||  + ||  + |  ||||+    |||| ||+|
088 LIRENEKEKRKERLKVTFDTTLKQSLFHITASQPADSATYLCALD 132