Affine Alignment
 
Alignment between PCDHGA11 (top ENST00000398587.7 935aa) and PCDHGA7 (bottom ENST00000518325.2 932aa) score 65987

007 RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 066
    ||   |   || | |||     | +| ||| |||+||||||+|+|||||||||||+||||
006 RGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVR 065

067 IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
    |+|||+|||||+| |||||+|||||||||+|   + | +|  +|+|| + +| ++|||||
066 IISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIID 125

127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
    |||| | |  +|+ +|+ |+  || || |  | ||||| ||||||||||| +||| ++  
126 INDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSG 185

187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
     |  | ||||||  ||||+|  | |+||| ||||| |     |+| |+||||| |+|+  
186 DDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLP 245

247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
     |+|+||||+  |||+| |+| | |||+|||| |||| +  |  ++| |+| |||+    
246 QYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLE 305

307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
     ||+|+  |||||+| ||| |  |   +||||+||||||||+|+||  +|| |++| |||
306 GLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTV 365

367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
    |||  +||+|||+||+|+| || +|||||||+  |||+|+|++ |||| +  ||||| ||
366 IALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKAT 425

427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
    | |+|||| |||+++ ||| ||||| ||||||| || |||||||||| ||| | ||+ ||
426 DGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNA 485

487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
     +|||| +||+|| |+||||||||+|||||||||||||| |+|+||| | ||||||||||
486 QITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSN 545

547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
    +|||||||||||| |||||||||||||||+||||||||||||||||||||||||||||||
546 MSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 605

607 YRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 666
    | ||||||||||||| +|||||||||||||||||||||||||||||||||||||||||||
606 YLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665

667 DSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLL 726
    ||||||||||||||        ||+|||||||| |||+|| ||+||||||| ||||||||
666 DSIPEVLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLL 725

727 QASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESC 786
    |||||||| +|||||||+|||||||||||||||| |||+||||||||||| | |||||||
726 QASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESC 785

787 EKSEPLLIAEDSAIILGKCDPT--SNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 844
    ||++ || + |      +|     | ||||||||||||||||||||||||||||||||||
786 EKNDSLLTSVD----FQECKENLPSIQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 841

845 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 904
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
842 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 901

905 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
    |||||||||||||||||||||||||||||||
902 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932