Alignment between PCDHGA11 (top ENST00000398587.7 935aa) and PCDHGB3 (bottom ENST00000576222.2 929aa) score 44574

007 RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 066
    ||   +  +|    |  |    +  |||++||| ++|| |||++||||    +|  | +|
008 RGPAGQRRMLFLFLLSLLDQALSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLR 067

067 IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
    +++  |   | |+| +|+|+ + ||||||+|   |+| |  |++ |  |  + | | | |
068 VIAEKK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQD 125

127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
    |||| |+| ++  |+++|| |+ || ||| +|+|||||||||| | |||+ +|||  +  
126 INDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKEN 185

187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
     ||++ |||||+  ||||++  | |+|||+|||+| |     |||+| | ||+ |+||| 
186 LDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQD 245

247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
    +|||+| ||+ +|+ || | | | ||||| |++|+| |+  +  ++|+|||+|||+   |
246 MYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIG 305

307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
     ||||+   | + ++ +|||       + | + | ||||||||+ |    | |++  || 
306 ELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTA 365

367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
    +||+   | ||| ||++ | +  + |||+ +   | |+|+|   |||| +  ||+|+|||
366 VALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITAT 425

427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
    |+|+||||+   + |++ | ||| |||  +||+ ++ |||| ||||  | | |||   | 
426 DKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNG 485

487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
    ||+| +    ++   ||||||+++ +||++| ++||+|| |  || + ||| | | ||+|
486 LVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSAN 545

547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
    ||| + | |+||||| +|||||  +||   ++ ||||||||||||||||| ||| |||||
546 VSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLS 605

607 YRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 666
    | +++|||||||++|  |||||||| | ||+| +| |+| |+| || |||||| | +  |
606 YHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFA 665

667 DSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLL 726
    ||+ |+  ||    + ++ + ++|  +||||+| +| +||+ ||+ ++|||    +    
666 DSLQEIQPDLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRL----RCSSR 720

727 QASEGGLAGMPTSHFVGVDGVQAFLQTYS-----HEVSLIADSQKSHLIFPQPNYGDTLI 781
     |+||     |   |  | ||   | |||     +  +  | |  |+  |   |     |
721 PATEGYF--QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLN-----I 770

782 SQESCEKSEPLLIAEDSAIILGKCDP--TSN-----QQAPPNTDWRFSQAQRPGTSGSQN 834
      |+    +  |+ ++++      +|   ||     +|||||||||||||||||||||||
771 KAENAAPQD--LLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQN 828

835 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 894
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
829 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 888

895 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
    |||||||||||||||||||||||||||||||||||||||||
889 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929