Affine Alignment
 
Alignment between ATP5F1A (top ENST00000398752.11 553aa) and ATP5F1B (bottom ENST00000262030.8 529aa) score 5168

005 RVAAAVVRALPRR---------AGLVSRNALGSSFIAARNFHASNTHLQKTGTAEMSSIL 055
    |||||      ||         | |+ | |  ++    |++ |  +   | | |    + 
007 RVAAAPASGALRRLTPSASLPPAQLLLR-AAPTAVHPVRDYAAQTSPSPKAGAATGRIV- 064

056 EERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVG 115
       ++||   |  +|         |+  +     ||  |    +  +  ++ +|    | 
065 --AVIGAVVDVQFDE---------GLPPILNALEVQGRE----TRLVLEVAQHLGESTVR 109

116 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 175
     +     + +  |  |  +|| + +||| | |||+++ +|  || +||| +|    +  +
110 TIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAE 169

176 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 235
    ||  +     +| + |||| || | |  +| +  + |    ||| + ++ | |  + + |
170 APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229

236 SDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 289
           | ++  +|++      |   + ++      ||     +|    ++    +   
230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282

290 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
      +| ++ |||||  |+  |+  |++ +   |  ++| || | |    |   +      +
283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342

349 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 408
     ||          ||+|++  |   | |++   |    +  |    |   +   || ||+
343 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398

409 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 464
    +   | ||+   +   +       |  |+ |  |+ +    |  | | |    +  +|| 
399 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457

465 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
     ++   | |    |     ||| ++    |++ || | | |
458 RKIQRFLSQ----PF----QVAEVFT---GHMGKLVPLKET 487